Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d19f
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.73 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 478 IVAPGSMDELYSYGGRCDGKNETMLSSQTIPPIIHTI 368
           I   G   E +SYGG+    N+T++  +  P ++H I
Sbjct: 2   IAVSGPSYEAFSYGGQARFNNQTVV-DKVPPDMLHLI 37


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 598 EYLTVGNSLALLPALLTSMSDGNHSPSDGP 687
           +YL VGNS A  P  L++ +  + S S  P
Sbjct: 815 DYLMVGNSPASSPRYLSAAATSSTSTSPRP 844


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 689 YGPSDGEWLPSLMDVSNAGSRAKLL----PTVKYSTQTSFE 579
           Y PS+  WLP ++  +NA    ++      T+KY+   S++
Sbjct: 109 YVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWK 149


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 21  TTAMARNIKDNNNIDPATLLSNVKST 98
           T + +   +D   +DP  ++SN KST
Sbjct: 430 TASGSNEDEDETPLDPVVVISNDKST 455


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 233  DCTQACLGDQTFGHICQQHKSM 168
            DCT A    QT  HI Q H  M
Sbjct: 1074 DCTMAEDVYQTLKHIIQTHGEM 1095


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 689 YGPSDGEWLPSLMDVSNA 636
           Y PS+  WLP ++  +NA
Sbjct: 96  YVPSEHIWLPDIVLYNNA 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,511
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)