Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d17f
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 38 0.006
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 38 0.006
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 34 0.12
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 33 0.16
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 33 0.16
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 30 2.0
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 29 3.5
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 29 3.5
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 29 3.5
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 6.1
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 144 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 251
C FY+C +G+ V M C FN CDWP V
Sbjct: 1258 CEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV 1293
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 711 NCNLFYYCVWGK 746
NC +FY CVWG+
Sbjct: 1257 NCEVFYRCVWGR 1268
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 87 CPPEQSENWEIELLLPHPQC-NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-ECG 260
C E E + + +C N F+ C+ G C NL FN CDWP+NV +C
Sbjct: 171 CSQVSGEYCESDGNISKSECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCS 230
Query: 261 DR 266
++
Sbjct: 231 EK 232
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 257
+ F CT G P+ M C L F+ K CD+ NV EC
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDEC 290
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 153 FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 251
FY C GQ V C NL FN +CD+ NV
Sbjct: 591 FYICANGQVVATTCPANLIFNPYVGECDYSTNV 623
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 CNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVE 254
C K F+ C G+ C G+L FN T CD+ EN E
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 141 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 257
QC+ F CT G+ + M C L F+ T +CD+ NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 132 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 257
P+ C+ F C+ G M C +L FN CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 141 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 257
QC+ F CT G+ + M C L F+ T +CD+ NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 132 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 257
P+ C+ F C+ G M C +L FN CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 147 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 257
N+ Y F +VC G+L +++ W PE EC
Sbjct: 417 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 453
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 147 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 257
N+ Y F +VC G+L +++ W PE EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 147 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 257
N+ Y F +VC G+L +++ W PE EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 693 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 610
A +EG LGNH + FR+FL + A E
Sbjct: 159 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 186
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 693 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 610
A +EG LGNH + FR+FL + A E
Sbjct: 165 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 192
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 693 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 610
A +EG LGNH + FR+FL + A E
Sbjct: 238 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 265
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 135 HPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQC 233
H NKF+KC G+ + + C N +++ T C
Sbjct: 29 HFDSNKFWKCEGGRWIVVTCQINYFYDATTGFC 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,715,140
Number of Sequences: 27780
Number of extensions: 187894
Number of successful extensions: 468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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