Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d17f
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 636 KPEIDFLENGCPVNPHIHWLLPH 704
           + E+D    G  +  H HWL  H
Sbjct: 495 RKELDSKTGGVNLKGHAHWLTLH 517


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 144 CNKFYKCTFGQPVEMVCYGNLYF 212
           C  F  C+       + YG L+F
Sbjct: 114 CRNFSTCSSHPTAAFISYGTLFF 136


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 144 CNKFYKCTFGQPVEMVCYGNLYF 212
           C  F  C+       + YG L+F
Sbjct: 113 CRNFSTCSSHPTAAFISYGTLFF 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,440
Number of Sequences: 438
Number of extensions: 2036
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)