Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d15r
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    31   0.16 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    31   0.27 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.84 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   7.8  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 26/87 (29%), Positives = 47/87 (54%)
 Frame = -3

Query: 843 RGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPVVELNDDSFVGLSNVIELEVG 664
           R LV L  +DLS N+FVT P  ++ + S L+ L F++N + +++      L  +  L + 
Sbjct: 522 RYLVNLTYLDLSYNNFVTFPLIITEL-SQLETLNFSHNLLSQIS-SKIGSLVKLKHLYLQ 579

Query: 663 ENDYLDEVKRGTFTPLKSLKVLHLCHN 583
            ND  + + +     LK+L+ + L +N
Sbjct: 580 FNDLSNRLPQ-EIGLLKNLETIDLSYN 605


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 525 LKEVYLDDNNLSELSPDLMPWSKLDVLGMTGNS 427
           L E+Y++ NNL+ L P++     L +L  +GNS
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNS 215


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 783 ESLSLVGSTLKYLTFNNNPVVELNDDSFVGLSNVIELE 670
           ES +L+ +TLK L   N  ++E    S++ LS V+E E
Sbjct: 617 ESKALIFNTLKILAVENTAILETVILSWISLSRVVEEE 654


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  INIVNWLTLEPCLIYFLDCINKKSQDHAKR-SYHCNGKD 208
           I+I+ W+T+EP  + F+  +   SQ +A R      GKD
Sbjct: 202 ISILGWVTVEPTPLSFMSEMKDSSQFYANRVMKEFKGKD 240


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -3

Query: 735 NNPVVELNDDSFVGLSNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHNRNLRYISHN 556
           N  V E N++  + L N+I   +G N  LD ++    + L +L+ L    NR +  ++ +
Sbjct: 454 NREVEEENEEILLVLLNIISSVIGRNAELD-LENPISSLLPALEQLSNYSNREISDLAKD 512

Query: 555 AFRGL---KDKWTLKEVY 511
            ++ L   KD ++L   Y
Sbjct: 513 VYKTLIQSKDDYSLALSY 530


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 585 CDINAGPSSFSKV 623
           CD+  GPSSF KV
Sbjct: 186 CDVEVGPSSFEKV 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,471
Number of Sequences: 5004
Number of extensions: 71731
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)