Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d15r
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    53   3e-09
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 53.2 bits (122), Expect = 3e-09
 Identities = 39/140 (27%), Positives = 72/140 (51%)
 Frame = -3

Query: 849 AFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPVVELNDDSFVGLSNVIELE 670
           AFR    L+++DLS N   +VP++L  + + LK L    N +    + SF  L  +  L 
Sbjct: 426 AFRNCSDLKELDLSGNELTSVPDALRDL-ALLKTLDLGENRISNFYNGSFRNLDQLTGLR 484

Query: 669 VGENDYLDEVKRGTFTPLKSLKVLHLCHNRNLRYISHNAFRGLKDKWTLKEVYLDDNNLS 490
           +  ND +  + RG    L +L++L+L  N+ ++++   AF   +    L+ + LD N LS
Sbjct: 485 LIGND-IGNLSRGMLWDLPNLQILNLARNK-VQHVERYAF---ERNMRLEAIRLDGNFLS 539

Query: 489 ELSPDLMPWSKLDVLGMTGN 430
           +++      + L +L ++ N
Sbjct: 540 DINGVFTSIASLLLLNLSEN 559



 Score = 28.7 bits (61), Expect = 0.072
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
 Frame = -3

Query: 849 AFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLT---FNN----NPVVELNDDSFVGL 691
           +++ L  L ++ +     + +PE        LK LT   FN+    +  +EL  DSF+GL
Sbjct: 87  SWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPDSFLGL 146

Query: 690 SNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHNR 580
             +  LE+ E++ +  +   +   L +L+ L+L  NR
Sbjct: 147 RELHTLEIVESN-VQALPVNSLCSLDNLQTLNLTENR 182


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 525 LKEVYLDDNNLSELSPDLMPWSKLDV 448
           + E+YLD+N +++L  +    S  D+
Sbjct: 87  IAEIYLDENEVNKLITECSAISDADI 112


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 383 PCLLTMLTRSQLHSQLLPVIPRTSSLLHGIRSGDNSLKLLSSRYTSFKVHLSFSP 547
           P ++   T+SQLH  L     R+ S          +  LLSS +++    L   P
Sbjct: 660 PAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGP 714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,882
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)