Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d14r
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   107   8e-25
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   102   2e-23
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.19 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   1.3  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   1.8  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    24   7.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   9.4  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  107 bits (256), Expect = 8e-25
 Identities = 52/75 (69%), Positives = 62/75 (82%)
 Frame = -2

Query: 321 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRK 142
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRK
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRK 67

Query: 141 SEIEYYALLAKIRCS 97
           SE+EYYA+L+  RCS
Sbjct: 68  SELEYYAMLS--RCS 80



 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = -3

Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
           R  VHHYSGNNI+LGTACGK +RV  LA+ D GDSD
Sbjct: 78  RCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSD 113


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  102 bits (245), Expect = 2e-23
 Identities = 47/67 (70%), Positives = 57/67 (85%)
 Frame = -2

Query: 309 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 130
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 129 YYALLAK 109
           YYA+L+K
Sbjct: 64  YYAMLSK 70



 Score = 60.5 bits (140), Expect = 9e-11
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -3

Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
           ++ VHHY+G NI+LGTACGK +RV  LAITD GDSD
Sbjct: 70  KANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSD 105


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 297 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 172
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 298 LCCNHFGSVNANESSPRAQMEKK-RLKTQN 384
           + C+H  S+NAN S+ RA M +  RL  +N
Sbjct: 146 VACDHEFSINANVSAARALMNRALRLNQEN 175


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 321 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 148
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 332 LAFTLPKWLQQRNRKRPSSQLTPAL 258
           L ++L +WL   N K PS+Q +  L
Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTL 153


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 238  SRFHHQSKAGVN*LDGLFLFLCCNHFGSVNAN 333
            +R ++    GV  +    LF CC  FG+V  N
Sbjct: 1143 NRINNSKPLGVFRIHDPSLFACCYQFGAVFVN 1174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,839
Number of Sequences: 5004
Number of extensions: 28461
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)