Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d14r
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 106 7e-24
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 98 2e-21
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 95 2e-20
03_05_0830 + 28034179-28035492 29 1.3
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 3.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 5.1
07_03_1085 - 23851852-23853165 27 5.1
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 27 5.1
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 26 8.9
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 26 8.9
03_01_0283 + 2193632-2195182 26 8.9
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257... 26 8.9
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 106 bits (254), Expect = 7e-24
Identities = 50/69 (72%), Positives = 59/69 (85%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 132 EYYALLAKI 106
EYYA+LAK+
Sbjct: 61 EYYAMLAKV 69
Score = 66.1 bits (154), Expect = 9e-12
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -3
Query: 101 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
VHH+ GNN++LGTACGKY+RVC L+I DPGDSD
Sbjct: 71 VHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSD 103
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 98.3 bits (234), Expect = 2e-21
Identities = 45/68 (66%), Positives = 54/68 (79%)
Frame = -2
Query: 309 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 130
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 129 YYALLAKI 106
YYA+L K+
Sbjct: 103 YYAMLGKV 110
Score = 67.7 bits (158), Expect = 3e-12
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -3
Query: 101 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
VHH+ GNN++LGTACGKYYRVC L+I DPGDSD
Sbjct: 112 VHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSD 144
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 95.1 bits (226), Expect = 2e-20
Identities = 44/62 (70%), Positives = 49/62 (79%)
Frame = -2
Query: 291 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 112
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 111 KI 106
K+
Sbjct: 186 KV 187
Score = 66.1 bits (154), Expect = 9e-12
Identities = 24/33 (72%), Positives = 31/33 (93%)
Frame = -3
Query: 101 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
V+H++GNN++LGTACGKYYRVC L++ DPGDSD
Sbjct: 189 VYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSD 221
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 160
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -2
Query: 261 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 148
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -2
Query: 309 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 154
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 160
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 59 MLFLIQCCSRCSGEHLI--LARR 121
+L L+ CCS CS HL+ LARR
Sbjct: 9 LLVLLLCCSCCSVRHLLEQLARR 31
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 324 YAPKMVA--AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQ 193
YAP+ V ++Q+K +E +N L+ + +G+Y K K +RQ
Sbjct: 375 YAPEDVRNDEERQEKFLEGLNDELSYPLMTGEYHDFQKLVDKAIRQ 420
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 246 KSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 151
KS Y GY + +T R+GK + I K+ PP
Sbjct: 18 KSAIYLWGYNHSGQTARKGKECHLRIPKSLPP 49
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 183 LLCLVEEFSKFACILSNIFPISSPKQGGS*LTRW 284
LLC VE FS C + + + + K S T W
Sbjct: 4 LLCFVEIFSILCCCIIYYYHLQTKKASASEPTEW 37
>01_01_0319 -
2574583-2574675,2575853-2576055,2576140-2576364,
2576590-2576603,2577146-2577210
Length = 199
Score = 26.2 bits (55), Expect = 8.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
++A Q+ + E+ N RL L +K+ + Q L+ + K K + K K+EI
Sbjct: 104 VLAQDSQRISQENENLRLQLALKTKELEHEENQKLRLQLELKNKDIESLKKQNDELKAEI 163
Query: 132 EYYALLAK 109
EYY K
Sbjct: 164 EYYKKTTK 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,532,229
Number of Sequences: 37544
Number of extensions: 187332
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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