Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d14r
(385 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 115 6e-26
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 115 6e-26
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 115 6e-26
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 115 6e-26
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 115 6e-26
X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein. 34 0.14
U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor... 34 0.14
BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation ... 34 0.14
BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation ... 34 0.14
BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein. 34 0.14
AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein. 34 0.14
J04449-1|AAA35747.1| 502|Homo sapiens cytochrome P450 nifedipin... 29 6.8
BX322644-3|CAI18448.2| 258|Homo sapiens tripartite motif-contai... 28 8.9
BX322644-2|CAM25692.1| 229|Homo sapiens tripartite motif-contai... 28 8.9
BX005441-3|CAM26236.1| 229|Homo sapiens tripartite motif-contai... 28 8.9
BX005441-2|CAM26235.1| 258|Homo sapiens tripartite motif-contai... 28 8.9
BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein. 28 8.9
AL671859-9|CAM24935.1| 258|Homo sapiens tripartite motif-contai... 28 8.9
AL671859-8|CAI17585.1| 229|Homo sapiens tripartite motif-contai... 28 8.9
AL669914-9|CAI18185.2| 258|Homo sapiens tripartite motif-contai... 28 8.9
AL669914-8|CAM25505.1| 229|Homo sapiens tripartite motif-contai... 28 8.9
AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein. 28 8.9
AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40 ... 28 8.9
AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein. 28 8.9
AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein. 28 8.9
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 115 bits (276), Expect = 6e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 132 EYYALLAK 109
EYYA+LAK
Sbjct: 61 EYYAMLAK 68
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3
Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
++GVHHYSGNNIELGTACGKYYRVCTLAI DPGDSD
Sbjct: 68 KTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSD 103
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 115 bits (276), Expect = 6e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 132 EYYALLAK 109
EYYA+LAK
Sbjct: 61 EYYAMLAK 68
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3
Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
++GVHHYSGNNIELGTACGKYYRVCTLAI DPGDSD
Sbjct: 68 KTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSD 103
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 115 bits (276), Expect = 6e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 132 EYYALLAK 109
EYYA+LAK
Sbjct: 61 EYYAMLAK 68
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3
Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
++GVHHYSGNNIELGTACGKYYRVCTLAI DPGDSD
Sbjct: 68 KTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSD 103
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 115 bits (276), Expect = 6e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 132 EYYALLAK 109
EYYA+LAK
Sbjct: 61 EYYAMLAK 68
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3
Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
++GVHHYSGNNIELGTACGKYYRVCTLAI DPGDSD
Sbjct: 68 KTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSD 103
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 115 bits (276), Expect = 6e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 312 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 133
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 132 EYYALLAK 109
EYYA+LAK
Sbjct: 61 EYYAMLAK 68
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3
Query: 110 RSGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 3
++GVHHYSGNNIELGTACGKYYRVCTLAI DPGDSD
Sbjct: 68 KTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSD 103
>X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor 1
protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 243 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 145
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>J04449-1|AAA35747.1| 502|Homo sapiens cytochrome P450 nifedipine
oxidase protein.
Length = 502
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 140 DFLSGGAFLAMITSFALPCRRVFKVCLYPKQYFPDFITKARRELIDS 280
DFL FL++I F +P V +C++P++ +F+ K+ + + +S
Sbjct: 214 DFLDP-FFLSIIFPFLIPILEVLNICVFPRE-VTNFLRKSVKRMKES 258
>BX322644-3|CAI18448.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>BX322644-2|CAM25692.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>BX005441-3|CAM26236.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>BX005441-2|CAM26235.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein.
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AL671859-9|CAM24935.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AL671859-8|CAI17585.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AL669914-9|CAI18185.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AL669914-8|CAM25505.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40
protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
>AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHL 106
CP+HQ RVC C R+L ++C S EH+
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHM 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,299,980
Number of Sequences: 237096
Number of extensions: 979747
Number of successful extensions: 1910
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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