Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13r
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.90 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.6  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    27   4.8  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   8.4  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 557 FEFIKRSNDVALLTINGEFDLLKVTVLKPSKAILKEDDP 441
           FE I   N + + + NGE D L +  L+P   I+ + DP
Sbjct: 519 FEVIDDFNSIYIYSYNGERDELVLNNLRPRYVIMFDSDP 557


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 678 NCCSLRERST-TSLH*NCCRNSRLGCWRKKLRHICSKRFPTIRVH*KK*RCCS 523
           +CCS  ++S  +S   +CC   + GC   +    CS+   +     +K  CCS
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTS-EKPSCCS 289


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 621 SGNNFNVARLCFFHAMSSSYNMPF 692
           SG N N  R+C +H   S + +PF
Sbjct: 161 SGKNENQVRVCLYHKHYSRWYLPF 184


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 SPCGFLAPKPIKVTGSSSFKIALLG 474
           +P   +AP+    T S +FK+A+LG
Sbjct: 11  TPLKSIAPRSFSTTSSRAFKVAVLG 35


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 753 QAELWWCIITTNDAMYIGR*YKFRRTRKNN 842
           Q+ L  C   T+D +YI + Y+F  + KNN
Sbjct: 448 QSTLQVCGAQTSDRLYISKSYEFCSSVKNN 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,807,269
Number of Sequences: 5004
Number of extensions: 82376
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)