Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13r
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    83   3e-16
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    78   1e-14
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    62   5e-10
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.64 
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 15/247 (6%)
 Frame = -3

Query: 824 AKFVSSTDVHRIVGGDYAPPKFGLFHASLQN--VSGHHVCGGAIVSKWHVVTAAHCVKE- 654
           A+  + + + R+VGG    P    + A+L+N     HH CG +I+ K H++TAAHC +E 
Sbjct: 16  ARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKAHH-CGASILDKTHLITAAHCFEED 74

Query: 653 AQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFEFIKR--SNDVALLTI---NGEFDLLK 489
            +    ++V G  D +    +   F +     +   K   S+D+A+L I     EF+   
Sbjct: 75  ERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYA 134

Query: 488 VTVLKPSKAILKEDDPVTLIGFGAKKPHGESSRVLRYLNLSVFNQQTCRYAMRYTRNVTE 309
             +  PSK  +       ++          + R+   L + + N+  C  + +   +++ 
Sbjct: 135 QPICLPSKDFVYTPGRQCVVSGWGSMGLRYAERLQAAL-IPIINRFDCVNSSQIYSSMSR 193

Query: 308 TMFCT-FKRIGQGTCHGDSGSPITRNNE-----LVGLVSWGIPCA-VGFPDVHTRIAPYI 150
           + FC  +   G  +C GDSG P     E     L G++SWG  CA    P ++T +APY+
Sbjct: 194 SAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYL 253

Query: 149 DWIETVV 129
            WI  ++
Sbjct: 254 SWISAII 260


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
 Frame = -3

Query: 797 HRIVGGDYAPPKFGLFHASLQNVSGHHVCGGAIVSKWHVVTAAHC-VKEAQPRYIKIVAG 621
           HR++GG  + P    +   L +  GHH CGG+++    V+TAAHC  K+ +P    +  G
Sbjct: 56  HRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVG 115

Query: 620 TADLDAGGKSYDTFAVNVFRQFEF-IKRSNDVALLTINGEFDLLKVT--VLKPSKAILKE 450
                  G  +   AV++   +      S D A++ I+   +       +  PS   + E
Sbjct: 116 -GHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAV-E 173

Query: 449 DDPVTLIGFGAK-KPHGESSRVLRYLNLSVFNQQTCRYAMRYTRNV-TETMFCTFKRIGQ 276
           +    + G+G+  +    S+  LR +++ + +   C     Y   +   +M C     G+
Sbjct: 174 NRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGK 233

Query: 275 -GTCHGDSGSPI--TRNN--ELVGLVSWGIPCA-VGFPDVHTRIAPYIDWI 141
             +C GDSG P+   R+   EL G+VSWGI CA  G P V+  +     WI
Sbjct: 234 IDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 25/221 (11%)
 Frame = -3

Query: 716 VCGGAIVSKWHVVTAAHCVKEAQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFEFIKRS 537
           +CG  ++  + +VTAAHC  + Q R    V      +   +S+      +   +      
Sbjct: 65  LCGATVIDDFWLVTAAHCALQLQTR--SFVYVREPKNNRERSFSVKEAYIHSGYNNQTAD 122

Query: 536 NDVALLTINGEFDLL---KVTVLKPSKAILKEDDPVTLIGFG---AKKPHGE----SSRV 387
           ND+ALL I+ +   L    V ++     +LK+     +IG+G    +   GE    +S+ 
Sbjct: 123 NDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQT 182

Query: 386 LRYLNLSVFNQQTC----RYAMRYTRNVTETMFCTFKRIGQGTCHGDSGSPI---TRNNE 228
           L+  ++ + +   C    R+    +  +T    C    +  GT  GDSG P+     N E
Sbjct: 183 LQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYL-HGTAPGDSGGPLLIHKSNGE 241

Query: 227 LV--GLVSWGIPCAVG------FPDVHTRIAPYIDWIETVV 129
            V  G+ S+G     G      FP V+TRI+ Y+ WI+ V+
Sbjct: 242 YVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
 Frame = -3

Query: 719 HVCGGAIVSKWHVVTAAHCVKEAQPRYI--KIVAGTADL---DAGGKSYDTFAVNVFRQF 555
           +VCGG +++   V+T+AHCV       +  K+  G   L   D G + + + A+ + ++F
Sbjct: 44  NVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNKHDDGEQEFRSHAMAISKKF 103

Query: 554 --EFIKRSNDVALLTINGEFDL 495
             +  + ++DVA++ +    D+
Sbjct: 104 FNDASEANDDVAVIFLPQRADV 125


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
 Frame = -3

Query: 305 MFCTFKRIGQG-TCHGDSGSPITRNNE------LVGLVSWGIPCAVGFPDVHTR 165
           ++CT   + +G +C GDSGS + R ++      LVG++S G+PC   + D H R
Sbjct: 195 VYCT-SAVNRGLSCDGDSGSGVVRTSDTRNVQVLVGVLSAGMPCPELY-DTHNR 246



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 707 GAIVSKWHVVTAAHCV 660
           G +VS WH+VTAAH +
Sbjct: 30  GTLVSPWHIVTAAHLI 45


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 716 VCGGAIVSKWHVVTAAHCVKE 654
           +CGG +++  HV+TAAHC ++
Sbjct: 61  ICGGTLITLKHVLTAAHCFQK 81



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = -3

Query: 440 VTLIGFGAKKPHGESSR---VLRYLNLSVFNQQTCRYAMRYTRNVTETMFCTFKRIGQGT 270
           VT  G+G+    G  +    +++ L L+     TC     +  ++    FCT +   +  
Sbjct: 212 VTSFGWGSDPGKGFDNAAFPMIQVLTLATETLATCEE--NWGTSIPFDSFCTAEEEDKNV 269

Query: 269 CHGDSGSPITRNNE------LVGLVSWGIPC 195
           C GDSG  +T +        ++ +VS+G  C
Sbjct: 270 CSGDSGGGLTFHQSDSAREFIIAIVSYGSDC 300


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -3

Query: 731 VSGHHVCGGAIVSKWHVVTAAHCVKEAQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFE 552
           V G +  GG+I+S +H++TAAH        +I  +    +L    K++     +++R  +
Sbjct: 36  VDGVNRLGGSIISPYHIITAAH-------GFITTIGSRGNL-CENKNWKKPNSSIYRSIK 87

Query: 551 FIKRSNDVA 525
           F++ +  VA
Sbjct: 88  FLRDTRKVA 96


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 382 RKTLLDSPCGFLAPKPIKVTGSSSFKIALLGFKTVTFSKSNS-PLIVKRATSLLLLMNSN 558
           ++T +D P       PI  +GSS   I ++  ++   SK  S   +  R +S+    N +
Sbjct: 143 KETDVDDPLSIPTMSPIGSSGSSEANIGMISSRSAPMSKMPSVEKLDNRHSSIRGYNNRS 202

Query: 559 CRKT 570
           CR+T
Sbjct: 203 CRRT 206


>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical protein
            R03D7.1 protein.
          Length = 1249

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 597  SASIQVCCSGNNFNVARLCFFHAMSSSY-NMPFRYYSSTADMVTRDILERRMKQAELWWC 773
            S S+ VC S ++ +V R  F   ++  Y ++   +Y+S  D    D+ + R K+ ++ W 
Sbjct: 877  SKSVVVCSSLSDMSV-RDAFLQDLNEDYEDVRQEHYASLKDRRFTDLNKTREKKFKIDWD 935

Query: 774  IITTNDAMYIGR 809
              T     ++GR
Sbjct: 936  KFTAVKPSFVGR 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,250,755
Number of Sequences: 27780
Number of extensions: 473742
Number of successful extensions: 1319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)