Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13r
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    83   4e-18
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 82.6 bits (195), Expect = 4e-18
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
 Frame = -3

Query: 794 RIVGG-DYAPPKFGLFHASLQNVSGHHVCGGAIVSKWHVVTAAHCVKEAQPRYIKIVAGT 618
           RIVGG +    +F +     +      +CG  I+SK +V+TAAHC+ +     + IV G 
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVGE 219

Query: 617 ADLDAGGKSYDT--FAVN---VFRQFEFIKRS----NDVALLTINGEFDL-LKV-TVLKP 471
            D  +  ++  T   ++N   +  +++ I++     ND+ALL    +     KV     P
Sbjct: 220 HDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLP 279

Query: 470 SKAILKE--DDPVTLIGFGAKKPHGESSRVLRYLNLSVFNQQTCRYAMRYTRNVTETMFC 297
            +  L       VT++G+G    +G  S +L+   L++  Q  C    +Y  N+     C
Sbjct: 280 FQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVEC---YKYYGNIMVNAMC 336

Query: 296 TFKRIGQGTCHGDSGSPI----TRNNELV--GLVSWGIPCAVGFPDVHTRIAPYIDWI 141
            + + G+  C  DSG P+     R   LV  G++SWG  C   +P+ +T++  YIDWI
Sbjct: 337 AYAK-GKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG-KYPNGNTKVGSYIDWI 392


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 475  FKTVTFSKSNSPLIVKRATSLLLLMNSNCRKTFTANV 585
            F  +  +K++  +  +       ++NSN R TF+ NV
Sbjct: 940  FNVIKLTKTSGTVQAQINPDFAFIVNSNLRLTFSKNV 976


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 592 LFPPASKSAVPATI 633
           L PPAS +++PATI
Sbjct: 94  LHPPASSTSLPATI 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 786 WW*LCTTKVRPVSCV 742
           WW +C T   P  CV
Sbjct: 490 WWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 786 WW*LCTTKVRPVSCV 742
           WW +C T   P  CV
Sbjct: 543 WWKICWTITTPAICV 557


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 15/57 (26%), Positives = 18/57 (31%)
 Frame = -3

Query: 377 LNLSVFNQQTCRYAMRYTRNVTETMFCTFKRIGQGTCHGDSGSPITRNNELVGLVSW 207
           LN S F   T  Y      N+  T+ CT      G        P    +E     SW
Sbjct: 132 LNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGECGPAADVDEKTDANSW 188


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 507 SVNSQKS-NIVTSF--NELELSENVYCKC 584
           S++SQ S +   SF  ++   S NVYCKC
Sbjct: 80  SMDSQNSASTYNSFLSSDSASSGNVYCKC 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,170
Number of Sequences: 438
Number of extensions: 5874
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)