Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13f
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.72 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    29   0.72 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   2.9  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    27   3.8  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.0  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    25   8.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   8.8  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 374 FEFIKRSNDVALLTINGEFDLLKVTVLKPSKAILKEDDP 490
           FE I   N + + + NGE D L +  L+P   I+ + DP
Sbjct: 519 FEVIDDFNSIYIYSYNGERDELVLNNLRPRYVIMFDSDP 557


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 43  LKVYDVFFKISFCYCYYSFLYGEICIIDRCTS--HRWW*LCT-TKVRPVS 183
           L +  VFFK  F YC +S L+  +  +D+ T    RW+ L   T +R VS
Sbjct: 201 LDISVVFFKEYFAYCKFSSLHPGLGFLDQYTGILERWYVLFNITMLRLVS 250


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 253 NCCSLRERST-TSLH*NCCRNSRLGCWRKKLRHICSKRFPTIRVH*KK*RCCS 408
           +CCS  ++S  +S   +CC   + GC   +    CS+   +     +K  CCS
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTS-EKPSCCS 289


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 310 SGNNFNVARLCFFHAMSSSYNMPF 239
           SG N N  R+C +H   S + +PF
Sbjct: 161 SGKNENQVRVCLYHKHYSRWYLPF 184


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 531 SPCGFLAPKPIKVTGSSSFKIALLG 457
           +P   +AP+    T S +FK+A+LG
Sbjct: 11  TPLKSIAPRSFSTTSSRAFKVAVLG 35


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  CISLRINMKPD*RCTMFFLRYHFV 82
           CI ++ NMK +   TM+FL + FV
Sbjct: 398 CIGIQHNMKLNLSATMYFLYFSFV 421


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 412 QKSNIVTSFNELELSENVYCKCVVAFSASIQVCCSGNN-FNVARLCFF 272
           Q +  + SFN+LE+S+++    ++ +       C GNN  + A++ +F
Sbjct: 92  QYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAKVWYF 139


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 496 SNWIVFLQNC-LAWLQDCNF**IEFSVNSQKSNIVTSFNELELSENVYCKCVVAFSASIQ 320
           SN+++ + N  L   Q+C    + FS +    N   +      +  +Y  CV AF  S++
Sbjct: 171 SNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYSLAAKIASSAATLYDSCVHAFE-SME 229

Query: 319 VCCSGNNFNVA 287
             C+ N   +A
Sbjct: 230 PACNPNFIRLA 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,853
Number of Sequences: 5004
Number of extensions: 68065
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)