Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13f
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0054 - 10122703-10122983,10123549-10125376                       29   3.0  
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168...    29   3.0  
01_06_1559 + 38247463-38247499,38247711-38247747,38248181-382482...    28   7.0  
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572...    28   9.2  

>10_06_0054 - 10122703-10122983,10123549-10125376
          Length = 702

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 274 FHAMSSSYNMPFRYYSSTADMVTRDILERRMKQAELWW 161
           F+AMS  Y + F++++ TAD    D+L R  +  E  W
Sbjct: 432 FYAMSGFY-VVFKFFNLTADATLIDVLNRGQEFCEKTW 468


>08_02_0585 +
           19014674-19014871,19014987-19015132,19016742-19016844,
           19017064-19017250,19017368-19017461,19017570-19017723,
           19018076-19018192,19018276-19018296,19019096-19019209,
           19019970-19020152,19021032-19021239,19021326-19021447,
           19021559-19021656,19021875-19022052,19022130-19022244,
           19022331-19022398,19022526-19022603,19023737-19023814,
           19023897-19024082
          Length = 815

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 398 DVALLTINGEFDLLKVTVLKPSKAILKEDDPVTLIGFGAKKPHGE 532
           + A L ++G  DL+      PS+ +  E+D + +IGFG   P GE
Sbjct: 56  NAAELAVDGSSDLV------PSEVVQFEEDEIVVIGFGQDLPIGE 94


>01_06_1559 +
           38247463-38247499,38247711-38247747,38248181-38248276,
           38248671-38248788,38248844-38248878,38249173-38249452,
           38249701-38249820,38250369-38250620
          Length = 324

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 AAHCVKEAQPRYIKIVAGTADLDAGGKSYD 346
           AA  V+ A  +  K+VA  AD DA GKS D
Sbjct: 288 AAAAVEMADAKTNKVVADDADADADGKSAD 317


>03_02_0758 +
           10954268-10954841,10955988-10957145,10957176-10957216,
           10957412-10957448,10957534-10957954,10958201-10958234
          Length = 754

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 356 VNVFRQFEFIKRSNDVALLTINGEFDLLKVTVLKPSKA---ILKEDDPVTLIGF 508
           V+ F QF+ +K   ++ + T     DLLK+  LK  +A   +L E D +  +GF
Sbjct: 330 VSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGF 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,769,893
Number of Sequences: 37544
Number of extensions: 439071
Number of successful extensions: 997
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)