Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d13f
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    73   3e-13
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    66   2e-11
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    46   2e-05
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.51 
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical ...    28   8.2  
AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 11/213 (5%)
 Frame = +2

Query: 134 HRIVGGDYAPPKFGLFHASLQNVSGHHVCGGAIVSKWHVVTAAHC-VKEAQPRYIKIVAG 310
           HR++GG  + P    +   L +  GHH CGG+++    V+TAAHC  K+ +P    +  G
Sbjct: 56  HRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVG 115

Query: 311 TADLDAGGKSYDTFAVNVFRQFEF-IKRSNDVALLTINGEFDLLKVT--VLKPSKAILKE 481
                  G  +   AV++   +      S D A++ I+   +       +  PS   + E
Sbjct: 116 -GHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAV-E 173

Query: 482 DDPVTLIGFGAK-KPHGESSRVLRYLNLSVFNQQTCRYAMRYTRNV-TETMFCTFKRIGQ 655
           +    + G+G+  +    S+  LR +++ + +   C     Y   +   +M C     G+
Sbjct: 174 NRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGK 233

Query: 656 -GTCHGDSGSPI--TRNN--ELVGLVSWGIPCA 739
             +C GDSG P+   R+   EL G+VSWGI CA
Sbjct: 234 IDSCQGDSGGPLMCARDGHWELTGVVSWGIGCA 266


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 14/225 (6%)
 Frame = +2

Query: 107 AKFVSSTDVHRIVGGDYAPPKFGLFHASLQN--VSGHHVCGGAIVSKWHVVTAAHCVKE- 277
           A+  + + + R+VGG    P    + A+L+N     HH CG +I+ K H++TAAHC +E 
Sbjct: 16  ARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKAHH-CGASILDKTHLITAAHCFEED 74

Query: 278 AQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFEFIKR--SNDVALLTI---NGEFDLLK 442
            +    ++V G  D +    +   F +     +   K   S+D+A+L I     EF+   
Sbjct: 75  ERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYA 134

Query: 443 VTVLKPSKAILKEDDPVTLIGFGAKKPHGESSRVLRYLNLSVFNQQTCRYAMRYTRNVTE 622
             +  PSK  +       ++          + R+   L + + N+  C  + +   +++ 
Sbjct: 135 QPICLPSKDFVYTPGRQCVVSGWGSMGLRYAERLQAAL-IPIINRFDCVNSSQIYSSMSR 193

Query: 623 TMFCT-FKRIGQGTCHGDSGSPITRNNE-----LVGLVSWGIPCA 739
           + FC  +   G  +C GDSG P     E     L G++SWG  CA
Sbjct: 194 SAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCA 238


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
 Frame = +2

Query: 215 VCGGAIVSKWHVVTAAHCVKEAQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFEFIKRS 394
           +CG  ++  + +VTAAHC  + Q R    V      +   +S+      +   +      
Sbjct: 65  LCGATVIDDFWLVTAAHCALQLQTR--SFVYVREPKNNRERSFSVKEAYIHSGYNNQTAD 122

Query: 395 NDVALLTINGEFDLL---KVTVLKPSKAILKEDDPVTLIGFG---AKKPHGE----SSRV 544
           ND+ALL I+ +   L    V ++     +LK+     +IG+G    +   GE    +S+ 
Sbjct: 123 NDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQT 182

Query: 545 LRYLNLSVFNQQTC----RYAMRYTRNVTETMFCTFKRIGQGTCHGDSGSPI---TRNNE 703
           L+  ++ + +   C    R+    +  +T    C    +  GT  GDSG P+     N E
Sbjct: 183 LQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYL-HGTAPGDSGGPLLIHKSNGE 241

Query: 704 LV--GLVSWG 727
            V  G+ S+G
Sbjct: 242 YVQIGITSYG 251


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
 Frame = +2

Query: 212 HVCGGAIVSKWHVVTAAHCVKEAQPRYI--KIVAGTADL---DAGGKSYDTFAVNVFRQF 376
           +VCGG +++   V+T+AHCV       +  K+  G   L   D G + + + A+ + ++F
Sbjct: 44  NVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNKHDDGEQEFRSHAMAISKKF 103

Query: 377 --EFIKRSNDVALLTINGEFDL 436
             +  + ++DVA++ +    D+
Sbjct: 104 FNDASEANDDVAVIFLPQRADV 125


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 215 VCGGAIVSKWHVVTAAHCVKE 277
           +CGG +++  HV+TAAHC ++
Sbjct: 61  ICGGTLITLKHVLTAAHCFQK 81



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = +2

Query: 491 VTLIGFGAKKPHGESSR---VLRYLNLSVFNQQTCRYAMRYTRNVTETMFCTFKRIGQGT 661
           VT  G+G+    G  +    +++ L L+     TC     +  ++    FCT +   +  
Sbjct: 212 VTSFGWGSDPGKGFDNAAFPMIQVLTLATETLATCEE--NWGTSIPFDSFCTAEEEDKNV 269

Query: 662 CHGDSGSPITRNNE------LVGLVSWGIPC 736
           C GDSG  +T +        ++ +VS+G  C
Sbjct: 270 CSGDSGGGLTFHQSDSAREFIIAIVSYGSDC 300


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
 Frame = +2

Query: 626 MFCTFKRIGQG-TCHGDSGSPITRNNE------LVGLVSWGIPC 736
           ++CT   + +G +C GDSGS + R ++      LVG++S G+PC
Sbjct: 195 VYCT-SAVNRGLSCDGDSGSGVVRTSDTRNVQVLVGVLSAGMPC 237



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 224 GAIVSKWHVVTAAHCV 271
           G +VS WH+VTAAH +
Sbjct: 30  GTLVSPWHIVTAAHLI 45


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +2

Query: 200 VSGHHVCGGAIVSKWHVVTAAHCVKEAQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFE 379
           V G +  GG+I+S +H++TAAH        +I  +    +L    K++     +++R  +
Sbjct: 36  VDGVNRLGGSIISPYHIITAAH-------GFITTIGSRGNL-CENKNWKKPNSSIYRSIK 87

Query: 380 FIKRSNDVA 406
           F++ +  VA
Sbjct: 88  FLRDTRKVA 96


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 549 RKTLLDSPCGFLAPKPIKVTGSSSFKIALLGFKTVTFSKSNS-PLIVKRATSLLLLMNSN 373
           ++T +D P       PI  +GSS   I ++  ++   SK  S   +  R +S+    N +
Sbjct: 143 KETDVDDPLSIPTMSPIGSSGSSEANIGMISSRSAPMSKMPSVEKLDNRHSSIRGYNNRS 202

Query: 372 CRKT 361
           CR+T
Sbjct: 203 CRRT 206


>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical protein
            R03D7.1 protein.
          Length = 1249

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 334  SASIQVCCSGNNFNVARLCFFHAMSSSY-NMPFRYYSSTADMVTRDILERRMKQAELWWC 158
            S S+ VC S ++ +V R  F   ++  Y ++   +Y+S  D    D+ + R K+ ++ W 
Sbjct: 877  SKSVVVCSSLSDMSV-RDAFLQDLNEDYEDVRQEHYASLKDRRFTDLNKTREKKFKIDWD 935

Query: 157  IITTNDAMYIGR 122
              T     ++GR
Sbjct: 936  KFTAVKPSFVGR 947


>AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical
           protein Y113G7B.11 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 358 YCKCVVAFSASIQVCCSGNNFNVARLCFFHAM 263
           YC  + + +  +Q  C GN+ +   LC  +AM
Sbjct: 43  YCVSITSKNGPVQRSCDGNSISQISLCSMYAM 74


>AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical
           protein Y63D3A.3 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 263 HCVKEAQPRYIKIVAGTADLDAGGKSYDTFAVNVFRQFE 379
           H +K + PR  K++  T  LD  G S +    ++FR  +
Sbjct: 222 HWLKGSNPRLEKLILKTYRLDTDGNSVEDSVADLFRDLD 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,137,171
Number of Sequences: 27780
Number of extensions: 396117
Number of successful extensions: 1130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)