Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d12f
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0085 - 689489-689935 31 1.1
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 1.9
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 29 2.5
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549... 29 3.3
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 29 4.3
08_02_0828 - 21596570-21597337 29 4.3
06_03_1219 - 28491185-28494415 29 4.3
03_01_0564 - 4176177-4178096 28 7.6
>12_01_0085 - 689489-689935
Length = 148
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 99 RRRDASSDYILSICYGFIEQSRKRCVHS*MRGQYSNE 209
RRRD SS+ SIC G +E+ + C + R ++ E
Sbjct: 64 RRRDESSEMECSICLGELEEGERCCTLAACRHEFHKE 100
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 262 DAVLWRARVGSAYSNSGGTMYIISRITPHTSFS 360
D ++ + GS YS++G +Y + R+ P+T+ S
Sbjct: 2242 DPIIPKFHYGSHYSSAGTVLYYLFRVEPYTTLS 2274
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 370 RANDIAVLRTRFNIQFVAGLVEAAGLVGRTYTFSNDQAVEAIGWGAVSSTDPVSSIQLR- 546
+ + ++RT + + V G+ AAG++ ++ AV A GWG S I++
Sbjct: 434 QGKSVILVRTETSPEDVGGMNAAAGILTARGGMTSHAAVVARGWGKCCVAG-CSGIRVND 492
Query: 547 -RTVIWVVDQQICSNRYSEL 603
V+ V D+ +C + L
Sbjct: 493 AEKVVLVADKVLCEGEWLSL 512
>01_07_0327 +
42752697-42752711,42753937-42754127,42754822-42754919,
42755792-42755880
Length = 130
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = -1
Query: 501 PSN--RFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 328
P+N R G V + A Y CS T E + P + GPG + + R Y
Sbjct: 56 PTNVMRMEGQYVASWLIACYCTCSHHSTCPEETLTQDPPLAEIAGPGETTKFGMNRRMGY 115
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 544 RRTVIWVVDQQICSNRYSELGFTVASNMV 630
RRTV+WV D++ + L T +SN+V
Sbjct: 75 RRTVVWVADRETPVTNGTTLSLTESSNLV 103
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 338 SRPTLASLPRPGPTTLPFSGPDSTFSS 418
S+P ++ +P P LPF+GP + FS+
Sbjct: 212 SKPHTETVVKPPPALLPFAGPAAYFSA 238
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 241 YTGNNAHDAVLWRARVGSAYSNSGGTMYIISRITPH 348
+ G A + WRAR+ A S G ++I R PH
Sbjct: 878 HAGGGAPQQLDWRARLNIARGASRGVLHIHERCKPH 913
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 401 LVLRTAMSLARVVGEKLVWG-VMRLMMYIVPPELL*AEPTLARH 273
L+ A+S+ +VG+ VWG +M + +Y+V ++ A L +H
Sbjct: 244 LMTLVALSIILIVGKVTVWGAIMFVSIYVVYAFVVAANEVLRKH 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,192
Number of Sequences: 37544
Number of extensions: 490427
Number of successful extensions: 1241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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