Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d11r
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118... 77 3e-15
10_08_1033 - 22444757-22444862,22444965-22445542 27 3.5
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 3.5
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 27 4.6
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 27 4.6
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 27 4.6
10_06_0168 - 11418105-11418220,11418231-11418360 27 6.1
04_04_0336 + 24500665-24502647 27 6.1
12_01_1039 - 10699966-10700313,10700376-10700486,10700709-107008... 26 8.1
05_04_0290 + 19883904-19885109 26 8.1
>01_07_0174 -
41711220-41711408,41711483-41711669,41711690-41711810,
41712194-41712266,41712494-41712585,41712900-41712948,
41713189-41713413
Length = 311
Score = 77.4 bits (182), Expect = 3e-15
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +1
Query: 181 IYIVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTIC 360
I++ IEA+ADG V G+PR +AL A+Q V+G+ MV +TGKHPG LKD V SPAG+TI
Sbjct: 221 IFLAIEAMADGGVAAGLPRDLALGLASQTVLGAATMVNKTGKHPGQLKDMVTSPAGTTIT 280
Query: 361 GV 366
G+
Sbjct: 281 GI 282
>10_08_1033 - 22444757-22444862,22444965-22445542
Length = 227
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 364 HHI*WNQQENKLHLSIDQDVYRFARPSDRYPLPPVLRDAM 245
HH QQ++ + D D+ R A + PLP +LRD +
Sbjct: 33 HHHHQQQQQSLRRATSDADIARSAPATASSPLPLLLRDIL 72
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 172 FEYSYLKIAVFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLHVHIFI 17
+ Y +AV + ++ NY Y F F+S ++C +YIF+ LH+ + +
Sbjct: 63 YNAGYAILAVTIVLSIYR-NYRYF-FCFVSSAAILC-IYIFSMCALHIKLLM 111
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 27.1 bits (57), Expect = 4.6
Identities = 25/98 (25%), Positives = 39/98 (39%)
Frame = -1
Query: 298 FARPSDRYPLPPVLRDAMPLLEEHLASQHHRLRLLSQYKSETFEYSYLKIAVFFLFRGFK 119
FAR S+ PL + A+ L++ L H+ L F S ++ V +
Sbjct: 183 FAR-SNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISAIQDRVAYHI---- 237
Query: 118 HNYDYTCFFFLSQKFVICSVYIFTTICLHVHIFIKFLP 5
H DY+ +F S+ +FT + IKF P
Sbjct: 238 HATDYSIYFLAFNYLAEASILLFTPFLAQFIMQIKFFP 275
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 145 VFFLFRGFKHNYDYTCFF--FLSQKFVICSVY 56
+FF R F H+Y Y C F QK + +Y
Sbjct: 224 IFFSLRIFSHSYSYVCILQQFEKQKRYLSLIY 255
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -1
Query: 178 ETFEYSYLKIA------VFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLHVHIFI 17
E F Y L +A VF + NY Y F F+S ++C +Y+F L++ I +
Sbjct: 108 EEFHYDNLSLADTPGRLVFPRVKDVMRNYRYF-FLFVSSASILC-IYVFAMSALYIKILM 165
>10_06_0168 - 11418105-11418220,11418231-11418360
Length = 81
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 258 CVTQCHCSRNTLLHST 211
C QCHC R+ LH+T
Sbjct: 20 CPKQCHCHRSGSLHAT 35
>04_04_0336 + 24500665-24502647
Length = 660
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 292 RPSDRYPLPPVLRDAMPLLEE 230
+PSDRY PP + PLL +
Sbjct: 282 KPSDRYEAPPFAQTVYPLLAD 302
>12_01_1039 -
10699966-10700313,10700376-10700486,10700709-10700860,
10701226-10701284,10702805-10703040
Length = 301
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 286 SDRYPLPPVLRDAMPLLEEH 227
S R P+PP L +PL EEH
Sbjct: 188 SSRPPVPPCLPPPLPLEEEH 207
>05_04_0290 + 19883904-19885109
Length = 401
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 289 PSDRYPLPPVLRDAMPLLEEHLASQHHRLRL 197
P D + LPPVLR LA+ H L L
Sbjct: 43 PPDHFTLPPVLRSCALTGSSPLAASAHALAL 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,979
Number of Sequences: 37544
Number of extensions: 178982
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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