Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d11r
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   8.1  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 325 LSIDQDVYRFARPSDRYPLPPVLRDAMPL 239
           L ID DVY   + S  +   P ++D +PL
Sbjct: 58  LPIDVDVYNTEQQSTVFVAIPRIQDGVPL 86


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 136 LFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLH 32
           +F   KH+     F     + +ICS  +F  I ++
Sbjct: 749 IFNASKHSAKRPSFISPRSQLIICSGLVFVQILIN 783


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 313 QDVYRFARPSDRYPLPP 263
           QD+    R + RYPL P
Sbjct: 111 QDIETIIRRNSRYPLRP 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -1

Query: 253 DAMPLLEEHLASQHHRLRLLSQYKSETFEYSYLKIAVFFL 134
           +A+  + EHL ++   ++    +K        L++ +FFL
Sbjct: 449 EAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFL 488


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 169 QMFQIYIVIEALADGAVKQGVPRAM 243
           Q  Q+YI ++  +DGA  +  P  M
Sbjct: 298 QPVQVYIQLKRPSDGATSEPFPFLM 322


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 169 QMFQIYIVIEALADGAVKQGVPRAM 243
           Q  Q+YI ++  +DGA  +  P  M
Sbjct: 298 QPVQVYIQLKRPSDGATSEPFPFLM 322


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 288 HLTATHYHLCCVTQCHCSRNTLLHST 211
           H T  H+H    T  H     L HS+
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLAHSS 452


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 184 KSETFEYSYLKIAVFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTT 44
           K+ T EYS LK+ +      FK  + Y    +L Q ++ C + +  +
Sbjct: 222 KTNTGEYSCLKVDLL-----FKREFSY----YLIQIYIPCCMLVIVS 259


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 184 KSETFEYSYLKIAVFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTT 44
           K+ T EYS LK+ +      FK  + Y    +L Q ++ C + +  +
Sbjct: 222 KTNTGEYSCLKVDLL-----FKREFSY----YLIQIYIPCCMLVIVS 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,630
Number of Sequences: 438
Number of extensions: 1946
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)