Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d11f
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    63   1e-11
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    29   0.22 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.39 
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    27   0.90 
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   0.90 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   2.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   2.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   2.7  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.7  
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   4.8  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   4.8  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      24   8.4  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 29/59 (49%), Positives = 43/59 (72%)
 Frame = -1

Query: 181 VIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTICGV 5
           +IEA+ DG V  G+P   A   AAQ +VG+G+MVLQ G+HP +++++V +PAG TI G+
Sbjct: 197 MIEAMTDGGVMMGIPFPQAQELAAQTMVGTGRMVLQ-GQHPAMIRNDVSTPAGCTISGL 254


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 22  NQQENKLHLSIDQDVYRFARPSDRYPLPPVLRDAMPLLEEHLASQH-HRLRLLSQYKSET 198
           N   + L + +D +   +   S + P+  VL D    L  HLA  H +R+ +L+ + S+ 
Sbjct: 20  NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASH-SDK 78

Query: 199 FEYSYLKIA 225
            EY Y  IA
Sbjct: 79  VEYLYPSIA 87


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 190 SETFEYSYLKIAVFFLFRGFKHNYDYTCFFFLSQKFVIC-----SVYIFTTICLHVHIFI 354
           SE   +  L +  FFL      ++ ++  FFLSQ F++       ++      L V +F+
Sbjct: 108 SELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFL 167

Query: 355 KFLHFYSQLLCL 390
            FL   S LL L
Sbjct: 168 SFLFSLSHLLSL 179


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 28  QENKLHLSIDQDVYRFARPSDRYPLPPVLRDAMPLLEEHLASQHHRLRLLSQYKSETFE 204
           ++NK+  S+      F  P DR PL P+ R A+P   E    Q+   + +  + ++ FE
Sbjct: 295 RKNKIRDSLQSSPLNFP-PRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFE 352


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 19  WNQQENKLHLSIDQDVYRFARPSDRYPLPPVLRDAMPLLEEHLASQHHRLRLLSQY 186
           + +Q+  L  +I+QD+   +    + P   VL + +PLL+E  A +  ++RLL  Y
Sbjct: 359 FEKQQLNLIGAIEQDLSTGSNVEGKVPRS-VLSELLPLLDEGNAEESTKIRLLLLY 413


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 136  EEHLASQHHRLRLLSQYKSETFE 204
            EE  ASQH RL L++ +K    E
Sbjct: 1376 EEEEASQHRRLNLVNNHKEHVLE 1398


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 254 TIMITLVFFFLAKNL*YALFTFLRPFVYMFTFLLNFYIFIHNFF 385
           T++I++ FFFL     Y++  FL  F  +     + Y    +FF
Sbjct: 20  TLVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFF 63


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 302  YALFTFLRPFVYMFTFLL 355
            + LF F +P+ Y F+FLL
Sbjct: 967  FVLFNFSQPYYYYFSFLL 984


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 58  GLLKDEVCSPAGSTICG 8
           G+L D V SP G T CG
Sbjct: 174 GMLYDPVVSPCGHTFCG 190


>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 SQHHRLRLLSQYKSETFEYSYL 216
           ++ H   +LS+Y S  FE+SYL
Sbjct: 13  NRRHEPEMLSEYPSLMFEHSYL 34


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 230 FFYSEASNTIMITLVFFFL-------AKNL*YALFTFLRPFVYMFTFLLNFYIFIHNFFV 388
           F +S+++    I+ +F FL          +   LF+F  P      FL+N + F  +F +
Sbjct: 799 FIHSKSAENQAISAIFMFLHTVGAPILTCISIPLFSF-EPLSKKNRFLINLFRFSFSFIL 857

Query: 389 YNKII 403
           YN +I
Sbjct: 858 YNLLI 862


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 333 TNGRKNVNRAYYKFLAKKKKTSVII 259
           T G      A+ +F AKK+K SVI+
Sbjct: 207 TQGCSKTVEAFLRFAAKKRKFSVIV 231


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +2

Query: 263 ITLVFFFLAKNL*YALFTFLRPFVYMFTF----LLNFYIFIHNFFVYNKI 400
           I + FF L     +ALF   R ++++F+F    L+   + I  +   N +
Sbjct: 225 INVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISAYIALNAV 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,592
Number of Sequences: 5004
Number of extensions: 33248
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)