Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d11f
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...    77   4e-15
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    28   3.5  
10_08_1033 - 22444757-22444862,22444965-22445542                       27   4.6  
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468...    27   6.1  
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418...    27   6.1  
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109...    27   6.1  
10_06_0168 - 11418105-11418220,11418231-11418360                       27   8.1  
04_04_0336 + 24500665-24502647                                         27   8.1  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = -1

Query: 190 IYIVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTIC 11
           I++ IEA+ADG V  G+PR +AL  A+Q V+G+  MV +TGKHPG LKD V SPAG+TI 
Sbjct: 221 IFLAIEAMADGGVAAGLPRDLALGLASQTVLGAATMVNKTGKHPGQLKDMVTSPAGTTIT 280

Query: 10  GV 5
           G+
Sbjct: 281 GI 282


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 199 FEYSYLKIAVFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLHVHIFIKFLH 366
           +   Y  +AV  +   ++ NY Y  F F+S   ++C +YIF+   LH+ + +   H
Sbjct: 63  YNAGYAILAVTIVLSIYR-NYRYF-FCFVSSAAILC-IYIFSMCALHIKLLMNRDH 115


>10_08_1033 - 22444757-22444862,22444965-22445542
          Length = 227

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 7   HHI*WNQQENKLHLSIDQDVYRFARPSDRYPLPPVLRDAM 126
           HH    QQ++    + D D+ R A  +   PLP +LRD +
Sbjct: 33  HHHHQQQQQSLRRATSDADIARSAPATASSPLPLLLRDIL 72


>03_05_0603 -
           26046145-26046273,26046400-26046459,26046820-26046895,
           26046988-26047109,26047286-26047360,26047466-26047536,
           26048102-26048129,26048625-26048738
          Length = 224

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 260 MITLVFFFLAKNL*YALFTFLRPFVYMFTFLLNFYIFIHNFFVYNKIILKVKK 418
           ++  ++ F    L Y+    +  F Y  TF++   +F+ N   + KI+  VKK
Sbjct: 166 ILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMWFMKILKGVKK 218


>02_02_0663 -
           12740733-12741104,12741260-12741326,12741709-12741809,
           12741852-12742273,12743678-12743685,12745164-12745396
          Length = 400

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 226 VFFLFRGFKHNYDYTCFF--FLSQKFVICSVY 315
           +FF  R F H+Y Y C    F  QK  +  +Y
Sbjct: 224 IFFSLRIFSHSYSYVCILQQFEKQKRYLSLIY 255


>01_06_1472 -
           37609732-37609851,37609883-37610104,37610542-37610922,
           37612583-37612816,37613589-37613738,37613831-37614016,
           37615058-37615120
          Length = 451

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +1

Query: 193 ETFEYSYLKIA------VFFLFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLHVHIFI 354
           E F Y  L +A      VF   +    NY Y  F F+S   ++C +Y+F    L++ I +
Sbjct: 108 EEFHYDNLSLADTPGRLVFPRVKDVMRNYRYF-FLFVSSASILC-IYVFAMSALYIKILM 165


>10_06_0168 - 11418105-11418220,11418231-11418360
          Length = 81

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 113 CVTQCHCSRNTLLHST 160
           C  QCHC R+  LH+T
Sbjct: 20  CPKQCHCHRSGSLHAT 35


>04_04_0336 + 24500665-24502647
          Length = 660

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 79  RPSDRYPLPPVLRDAMPLLEE 141
           +PSDRY  PP  +   PLL +
Sbjct: 282 KPSDRYEAPPFAQTVYPLLAD 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,866
Number of Sequences: 37544
Number of extensions: 193933
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)