Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d11f
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  LSIDQDVYRFARPSDRYPLPPVLRDAMPL 132
           L ID DVY   + S  +   P ++D +PL
Sbjct: 58  LPIDVDVYNTEQQSTVFVAIPRIQDGVPL 86


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 235 LFRGFKHNYDYTCFFFLSQKFVICSVYIFTTICLH 339
           +F   KH+     F     + +ICS  +F  I ++
Sbjct: 749 IFNASKHSAKRPSFISPRSQLIICSGLVFVQILIN 783


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 58  QDVYRFARPSDRYPLPP 108
           QD+    R + RYPL P
Sbjct: 111 QDIETIIRRNSRYPLRP 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = +1

Query: 118 DAMPLLEEHLASQHHRLRLLSQYKSETFEYSYLKIAVFFL 237
           +A+  + EHL ++   ++    +K        L++ +FFL
Sbjct: 449 EAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFL 488


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 202 QMFQIYIVIEALADGAVKQGVPRAM 128
           Q  Q+YI ++  +DGA  +  P  M
Sbjct: 298 QPVQVYIQLKRPSDGATSEPFPFLM 322


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 202 QMFQIYIVIEALADGAVKQGVPRAM 128
           Q  Q+YI ++  +DGA  +  P  M
Sbjct: 298 QPVQVYIQLKRPSDGATSEPFPFLM 322


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 83  HLTATHYHLCCVTQCHCSRNTLLHST 160
           H T  H+H    T  H     L HS+
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLAHSS 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,137
Number of Sequences: 438
Number of extensions: 2130
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)