Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d10f
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    79   8e-16
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    66   5e-12
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   3.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.7  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   4.7  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +2

Query: 320 LSADRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQR---LQLCIFGG-GHSL 487
           +S D  Y+L      Q +R+S+ A++ LYN  T     +        + L  +   GH L
Sbjct: 124 ISFDAKYVLVSVNKSQRWRHSSFAQYYLYNTETKDVNMLGQDNEHWTISLAEWSPTGHQL 183

Query: 488 AYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSRDGSYLA 667
           ++V NN++Y + +N     +LT DG   V +NG TDW+YEE+V+ +    W+S D   +A
Sbjct: 184 SFVYNNDLY-VRKNDGNVQRLTYDGTVDV-FNGLTDWIYEEEVLSSPSTIWWSPDSDKIA 241

Query: 668 FATFNDTEVESYSY 709
           F   N++E+ +Y Y
Sbjct: 242 FLKLNESEIPTYHY 255


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
 Frame = +2

Query: 272 LVAGDLMAFLNTNNPILSADRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQR 451
           L+   ++   N +    S+D  YI       + +R+S      L   AT     +A+ Q 
Sbjct: 165 LITSFVLTCKNLHRKRYSSDMEYIAFSCSKDRRWRHSYYEDVYLVERATGRIEHLASDQS 224

Query: 452 LQLCIFGG---GHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMY 622
            ++ +      GH L Y L +N++         + +T+      ++NG++DWVYEE+++ 
Sbjct: 225 KKIVVAEWSPIGHKLVYGLGSNLFIWESFSEPPVCITDQSDLDGLFNGNSDWVYEEEILQ 284

Query: 623 TGQATWFSRDGSYLAFATFNDTEV 694
           + +A W+S DG+ L++ + +D++V
Sbjct: 285 SSKAVWWSPDGNCLSYLSIDDSKV 308


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 512  YYLPENRNQAIQLTNDGIPGVIYNGHTD 595
            ++ PE+ +  ++L  + +PGV+ NG TD
Sbjct: 1516 HFTPESEHYYLEL-KESLPGVLQNGQTD 1542


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 423 HPSTSRMANVSSYASSAVDTPSP 491
           HPSTS  +++SS ++ +V  P+P
Sbjct: 61  HPSTSSTSHISSPSAFSVQNPNP 83


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 432 TSRMANVSSYASSAVDTPSPMCLTTTFITYPRTGIKLFNLRMTVSPESYTMDTPI 596
           TS  ++VSS+ SS+    + +  + T +TY  TG    +   T SP  Y+  + I
Sbjct: 303 TSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTG--SATFTSSPPFYSNSSVI 355



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 432 TSRMANVSSYASSAVDTPSPMCLTTTFITYPRTGIKLFNLRMTVSPESYTMDTPI 596
           TS  ++VSS+ SS     + +  + T ITY  TG    +   T SP  Y+  + I
Sbjct: 357 TSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTG--SATFTSSPPFYSNSSVI 409


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 195 SEIQTPVK-PRCVNCPVTNSSRVKELWLDAVVTTAANTHHH 76
           +++  PV+ PR V  PVTN+S  ++ W D      AN+  H
Sbjct: 263 NQLNEPVEQPRVVQTPVTNASE-QQAWNDFDEILHANSSVH 302


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 519 YPRTGIKLFNLRMTVSPESYTMDTPIGCTKRTLCIPDKRLGSLGTVHILRLQRSTIPKSK 698
           YP  G  +  L  T S  +   DTPI  T   L +    +G+L   +++ +Q S  P   
Sbjct: 418 YPMIGGWIVLLAGTGSMIAIYYDTPIPRTMGFLALTAVGIGNLFQPNLIAIQASVPPALM 477

Query: 699 AT 704
           AT
Sbjct: 478 AT 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,438
Number of Sequences: 5004
Number of extensions: 70933
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)