Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d10f
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018...    34   0.099
08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966...    29   2.8  
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566...    29   4.9  
08_02_1188 + 25053594-25054941,25055025-25055650                       28   8.6  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    28   8.6  
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    28   8.6  

>02_02_0501 -
           10999203-10999754,11000724-11001460,11001461-11001836,
           11001917-11001946,11002718-11002912,11003604-11004149
          Length = 811

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 476 GHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSRDG 655
           G  +AYV ++ ++ +  +  Q  QLT         +G  +++ +E+ M      W+S D 
Sbjct: 214 GSMIAYVRDDELHTVGFSDGQTTQLTYGASESGKIHGLAEYIAQEE-MERKMGFWWSPDS 272

Query: 656 SYLAFATFNDTEVESY 703
            +LAF   + +E+  Y
Sbjct: 273 KHLAFTEVDSSEIPLY 288


>08_02_0720 +
           20394898-20395284,20396062-20396202,20396304-20396669,
           20397146-20397388,20397474-20397566,20397892-20398077,
           20398259-20398471
          Length = 542

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 96  LWLQLHQARAPSLWRSSLQDNLRNEVLPASGFLTQNSRTQLLVNLVFT 239
           +W +L    A ++W  +L   L  E L   G +T+  +  +  N + T
Sbjct: 386 MWTRLQPLYASNMWNEALNKRLGTEKLDLHGIITETGKRGMSFNQLLT 433


>11_01_0688 -
           5667539-5667655,5667792-5667953,5668084-5668179,
           5668278-5668339,5668434-5668509,5668612-5668694,
           5668807-5669132,5669741-5669787,5669900-5670036,
           5670135-5670168
          Length = 379

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 179 GVWISDTEFTYTIAGEPGIHMFNVQTLTSSVLVAGDLMAFLNTNNPI 319
           GV I D +  +TI G+P  H     T +   ++    +A +N   P+
Sbjct: 123 GVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPL 169


>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 311 NPILSADRAYILAPSEVQQVYRYSTTAKF--ALYNIATATSVDIANGQRLQLCIFGGGHS 484
           +P ++  RAY  AP E   +Y Y +      AL+   TA+   +    RL + + G    
Sbjct: 416 HPNVARLRAYYYAPDEKLLIYDYLSNGSLHSALHGGPTASPTPLPWSMRLSI-VQGAARG 474

Query: 485 LAYV 496
           LAY+
Sbjct: 475 LAYL 478


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 693  TSVSLNVANARYEPSRENQVACPVYITSSSYTQS-VCPLYMTPGIPSF 553
            +S S N ++ +Y PS     + P Y +S+S T S   P Y  P  PS+
Sbjct: 1804 SSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPTSPSYSQPS-PSY 1850


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 241 HVNTRFTSNCVREFCVR-NPDAGKTSLRKLSCNELLQSEG 125
           HV      N +++   R  P+AG   LRK  CN+L +  G
Sbjct: 97  HVIAEAGMNAIKDGYTRYTPNAGTLELRKAICNKLQEENG 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,487
Number of Sequences: 37544
Number of extensions: 476154
Number of successful extensions: 1270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)