Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d10f
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    55   4e-08
Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical pr...    48   9e-06
Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical pr...    44   8e-05
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    31   0.63 
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    31   0.83 
AL021474-4|CAD54164.1|  445|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U20861-4|AAA62296.3|  297|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   7.8  
AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
 Frame = +2

Query: 479 HSLAYVLNNNVYYL--PENRNQAIQLTNDGIPGVIYN--GHTDWVYEEDVMYTGQATWFS 646
           +   YV N N+YY   PE  + AIQLT   + G  +N  G  +W+YEE+++    A W+S
Sbjct: 213 NDFVYVHNYNLYYQKDPEKPDGAIQLT---VGGSTFNRFGLANWLYEEEILEASSAVWWS 269

Query: 647 RDGSYLAFATFNDTEV 694
             G Y+++  F+D EV
Sbjct: 270 PSGRYVSYLRFDDREV 285


>Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical
           protein T23F1.7b protein.
          Length = 799

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 27/119 (22%), Positives = 57/119 (47%)
 Frame = +2

Query: 329 DRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAYVLNNN 508
           +R   L P EV++++R  + ++   Y+I       +    +      G  +   +V +N 
Sbjct: 150 ERLNPLLPFEVEELFRELSDSRIT-YDIGLRKEESVIQAFKWN----GKFNDFVFVESNK 204

Query: 509 VYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSRDGSYLAFATFND 685
           +YY      + +   ++G    + +G  DW+YEE++     A W+S  G  LA+A++++
Sbjct: 205 IYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEIFGRKDAMWWSTKGDQLAYASYDN 262


>Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical
           protein T23F1.7a protein.
          Length = 779

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +2

Query: 470 GGGHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSR 649
           G  +   +V +N +YY      + +   ++G    + +G  DW+YEE++     A W+S 
Sbjct: 172 GKFNDFVFVESNKIYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEIFGRKDAMWWST 230

Query: 650 DGSYLAFATFND 685
            G  LA+A++++
Sbjct: 231 KGDQLAYASYDN 242


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 450 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 620
           V +YA    +T  P+CL T  + T P  R  IK++   + +  ++Y    PI    R   
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFL 245

Query: 621 IPDK 632
           +P K
Sbjct: 246 VPHK 249


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 450 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 620
           V +YA    +T  P+CL T  + T P  R  IK++   + +  ++Y    P+    R   
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFL 245

Query: 621 IPDK 632
           +P K
Sbjct: 246 VPHK 249


>AL021474-4|CAD54164.1|  445|Caenorhabditis elegans Hypothetical
           protein Y32F6A.5 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 545 QLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSRDGSYLAFATFNDTEVESYSYYYF 718
           QL  DG   ++YNG+ D +        G A W +R  ++   ATFN T   S+    F
Sbjct: 348 QLLKDGYNVIVYNGNEDLICNT----MGTAAWVNR-LTWDGAATFNSTTRHSFKTQSF 400


>Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical
           protein D1053.4 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 298 KCHKIASNKYTTCQSLYIEHVNT---RFTSNCVREFCVRNPDAGKTSLRKLSCNELLQSE 128
           +C+K   N +++CQ  Y   ++T         V++ C+   DA +T + K +    L+  
Sbjct: 32  RCNKEIGNSFSSCQGKYCYKMHTPDDTTVDGIVKKGCMNAADA-QTEVGKCT-RRPLEEG 89

Query: 127 GALA*CSCN 101
           GA   C CN
Sbjct: 90  GAELMCVCN 98


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 85  RVSRCGYNCIKPELLHSGGVRYRTIYATRFYR-RLDF*HRIHVHNCW 222
           +VS C  NC  P L H G +R +T   +R++R R+   H I +   W
Sbjct: 208 QVSFCRTNCSSPNLYHIGEMR-QTYNVSRYWRYRIAVWHGILLMFAW 253


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 369 TC*TSLGARM*ALSADRIGLLVFKNAIRSPATSTLLVKV-CTLN 241
           TC + L  +   LSA R G LVF N+++SP +   ++ + C  N
Sbjct: 339 TCLSLLDIKCPILSAPRNGELVFTNSVKSPYSLNSVISLKCDRN 382


>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 344 LAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQ--RLQLCI 466
           L+PS+ Q++YR      F  YNI  AT    A  +  R+Q+ I
Sbjct: 121 LSPSQQQELYRIFEVPIFDRYNIVLATFKQFAKTEEARIQIAI 163


>U20861-4|AAA62296.3|  297|Caenorhabditis elegans Hypothetical
           protein C28H8.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 602 YEEDVMYTGQATWFSRDGSYLAFATFNDTEVES 700
           Y  D +YTG    +   GSY  FA   +T+V +
Sbjct: 138 YAADPIYTGNGELYEPVGSYFPFAVGKETDVST 170


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +2

Query: 359 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 520
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 521 PENRN 535
           P  +N
Sbjct: 121 PTGQN 125


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +2

Query: 359 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 520
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 521 PENRN 535
           P  +N
Sbjct: 121 PTGQN 125


>AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical
           protein C54G6.1a protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 299 LNTNNPILSADRAYILAPSEVQQVYR 376
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 204 LKTATPIIDFDAELLAAPAEIQQILR 229


>AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical
           protein C54G6.1b protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 299 LNTNNPILSADRAYILAPSEVQQVYR 376
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 197 LKTATPIIDFDAELLAAPAEIQQILR 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,455
Number of Sequences: 27780
Number of extensions: 407613
Number of successful extensions: 1217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)