Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d09r
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 52 9e-07
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 37 0.020
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 31 1.7
07_01_1184 - 11251376-11251499,11251583-11251881 30 3.0
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 30 3.0
07_01_0120 - 918901-920436 29 5.2
02_01_0711 - 5324079-5324141,5324900-5324962,5325329-5325642,532... 29 6.9
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 29 6.9
11_01_0540 + 4269373-4269563,4269636-4269717,4269736-4269889,426... 28 9.1
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 9.1
04_04_1522 + 34144288-34145550 28 9.1
01_07_0172 + 41704905-41706170 28 9.1
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 51.6 bits (118), Expect = 9e-07
Identities = 27/93 (29%), Positives = 40/93 (43%)
Frame = -3
Query: 503 RNTSYTSEKTTMRLWTYQTCVEFGWYQTTTSTRQPFLTTIPLEYFHQMCRDFFALNINEN 324
+NT+ ++ RLW YQ C E ++Q I Y +CR+ F + +
Sbjct: 348 KNTTPPPAESAYRLWWYQVCSEVAYFQVAPKNDSVRSAKIDTRYHLDLCRNVFGEGVYPD 407
Query: 323 LLRAGIERTNLMFGGLSRLPDKVVTVMGSHDPW 225
+ TNL +GG K+V GS DPW
Sbjct: 408 VF-----MTNLYYGGTRIAGSKIVFANGSQDPW 435
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 37.1 bits (82), Expect = 0.020
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -3
Query: 488 TSEKTTMRLWTYQTCVEFGWYQTTTSTRQPFLTTIPLEYFHQMCRDFFALNINENLLRAG 309
T + T+ RLW +Q C E ++Q T I Y +CR+ F + ++
Sbjct: 332 TPDDTSSRLWWFQVCSEVAYFQVAPKNDSIRSTEINTGYHLDLCRNVFGEGVYPDVF--- 388
Query: 308 IERTNLMFGG 279
TNL +GG
Sbjct: 389 --MTNLYYGG 396
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 488 TSEKTTMRLWTYQTCVEFGWYQTTTSTRQPFLTTIPLEYFHQMCRDFFA 342
T +TT W + + ++ TT+ P L T+ FH++ R F A
Sbjct: 714 TFRRTTAASWPMLWTLRYSTFRRTTAASWPMLWTLRYSTFHRINRSFVA 762
>07_01_1184 - 11251376-11251499,11251583-11251881
Length = 140
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 330 IDVQSEEISAHLVEVFERYCSQEGL 404
+ +QS E+S +LV +F R C EG+
Sbjct: 95 VPIQSRELSGYLVSLFMRTCRDEGI 119
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 752 TFATLVPVLRSWSITMSVVAPLLLCW 829
+FATL +L SW+ITM+ A LLL W
Sbjct: 413 SFATLANMLTSWAITMT--ANLLLSW 436
>07_01_0120 - 918901-920436
Length = 511
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 203 DHQHHLAPVFVVPQISHCRAIRPTGDSETEEL 108
DH ++P F + + SH + IR DS ++ L
Sbjct: 95 DHHGEVSPSFAISKFSHAKRIRFCSDSSSQSL 126
>02_01_0711 -
5324079-5324141,5324900-5324962,5325329-5325642,
5326076-5326245,5326347-5326431,5326775-5327015
Length = 311
Score = 28.7 bits (61), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 181 GAKWC*WSTLGPIGLQGSWLPI 246
G++WC GP+ LQG W+ +
Sbjct: 289 GSEWCSSVDAGPLDLQGQWMDV 310
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 780 RRTGTSVANVQDM--FANQRALYSRPS---NIFLVWNYGNVCIF 664
RR GT + N+ + + Q Y+ PS N+FL W+ N C+F
Sbjct: 106 RRYGTLLRNISFLLPYDGQGKAYACPSDKINVFLKWSRCNFCLF 149
>11_01_0540 +
4269373-4269563,4269636-4269717,4269736-4269889,
4269948-4269972,4270838-4270976,4271076-4271261,
4271379-4271442,4271544-4271659
Length = 318
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 756 NVQDMFANQRALYSRPSNIFLVWNYGNVCIFGTVCGTR 643
++Q F N + P N +V YGNVC+ G + G R
Sbjct: 237 SLQLNFGNNAVMEIPPENYLIVTEYGNVCL-GILHGCR 273
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 617 ITNTSVANPVQRLANWITAQSWTQPCIETRYSEVVATHRNTSYTSEKTTMRLWTY 453
+ NTSV P +++ + I + + Q I + E+V H + SY + MRLW Y
Sbjct: 1497 LQNTSVNLPKEKVLSRI--RKYLQ-IIGNKIGEIVDQH-SESYKQSRMAMRLWNY 1547
>04_04_1522 + 34144288-34145550
Length = 420
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 241 PITVTTLSGSRDKPPNIKLVLSIPARRRFSLMFKAKKSLHIWWKYSRG 384
P +T G+ PP VLS+P R R+ L F + +W S G
Sbjct: 126 PCLLTFWRGAASSPPQCS-VLSLPLRARYKLPFGFLPAWDLWLVGSSG 172
>01_07_0172 + 41704905-41706170
Length = 421
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 700 NVARSRVERALIGEHVLNICDACPG 774
+V R+RVER L+GE + NI AC G
Sbjct: 321 SVERARVERWLLGEEIKNIV-ACDG 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,897,343
Number of Sequences: 37544
Number of extensions: 608785
Number of successful extensions: 1961
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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