Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d09r
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 734 LANMS*TFATLVPVLRSWSITMSVVAPLLLCWISNFVRL 850
           +A++  TF  ++P+   W+IT+S  A  ++C I  F R+
Sbjct: 82  IADLLVTFL-MMPLEIGWAITVSWKAGDVMCRIMAFFRM 119


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 664 KYANVSVIPYQKNVAR 711
           +Y N SV PY KN  +
Sbjct: 437 RYPNASVTPYNKNYTK 452



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 604 VSLIRCSVWLIG*PHRAGHSHVSRQDTV 521
           V ++   VW+I  P +A H + +R+D +
Sbjct: 778 VQILINGVWMIIDPAKAMHHYPTREDNL 805


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 230 PWSPMGPNVDHQHHLAPVFVVPQ 162
           PW PM   +    H+ P    PQ
Sbjct: 139 PWVPMQEQIPRFRHIGPSTPFPQ 161


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 405  PALPDYNTSRILPPN 361
            P +PD NTS  LP N
Sbjct: 1061 PMIPDDNTSLALPKN 1075


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 122 ETEELERTKVAVLQRMQSFVTGIDSGASELRAVA 21
           ETE+ E T+   L+ +++ V  + + ++E+ AVA
Sbjct: 54  ETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVA 87


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  RSDRTQFARAAVYAGHKALHPLQ 86
           +  + QF   AVYA   ALH LQ
Sbjct: 326 QESKVQFVVDAVYAFALALHNLQ 348


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 242 GSHDPWSPMGPNVDHQHH 189
           G+H     MGP   H HH
Sbjct: 339 GNHTMGPTMGPPHHHHHH 356


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  RSDRTQFARAAVYAGHKALHPLQ 86
           +  + QF   AVYA   ALH LQ
Sbjct: 416 QESKVQFVVDAVYAFALALHNLQ 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,697
Number of Sequences: 438
Number of extensions: 5974
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)