Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d09f
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    29   0.91 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    28   1.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.6  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    27   3.7  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.8  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    25   8.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.5  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 571 EDKPVASKSPCCPHTNTQPKPLSPA 497
           ED   +S+SP  PH + QP  LSP+
Sbjct: 90  EDSGNSSQSPTSPHPSNQPAMLSPS 114


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 630 WKVFLSM*RSTIREDCVH*MRISQSHPSRHAARIRTPNQSHFRL-PELSCF---EGVALD 463
           WK++ S+    + E  +  MR     P   A+RIR P  S+F+  P+ S     EGV L 
Sbjct: 204 WKMYGSLPWHKLFEPTIRLMRDGMPMPKELASRIRRPEFSYFKTHPDWSKIFAPEGVFLH 263

Query: 462 V 460
           V
Sbjct: 264 V 264


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 137  EFPLKDGSMSDSTISTQRILLRFPCVTTTTMNSRPRT 247
            ++   DGS+S +T++T +    F    TTT    P T
Sbjct: 919  QYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTPTPTT 955


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 28/124 (22%), Positives = 48/124 (38%)
 Frame = +1

Query: 289 WVRSGLAYELAEATRAGLFYTEHRYYGLTRPTEDTGLEFLRFLTVDQALADLAQFIQYVK 468
           W  +  ++ LAE  R  +  T+ +YY L    + T  E      +++    +   +Q ++
Sbjct: 200 WAENTCSFRLAELLRNSIGDTQLQYYSLFCFWQLT-FESHIAQDINKRFDLIKLLVQIIR 258

Query: 469 SDAFEAGQFRQAKVALVGCSYAGSMATWMRLAYPHLVDAVFSDSGPLHAQEDFPEYLEVI 648
           SD  +   +R     LV         T   +   H+  AV        A ED   YL+ I
Sbjct: 259 SDT-KTKVYRLVLAILVNLIDKAPKDTISTMLLEHVDKAVQLLQKRKWADEDITNYLDFI 317

Query: 649 TEAI 660
           T  +
Sbjct: 318 TSTL 321


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 506 FACLNCPASKASLLTYCMNCARSAKA 429
           +ACL C  +  SL   C +C+ S  A
Sbjct: 47  YACLTCQKASGSLNAVCYSCSISCHA 72


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 477 GVALDV--LYELRQVRQGLVHGQEAQELQPRIFS 382
           G+A DV  LYEL + +  L   +E +++QP+ F+
Sbjct: 55  GLATDVQTLYELFRYKVNLYKFREERQIQPKTFA 88


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 583  RPLDEDKPVASKSPCCPHTNTQPKPLS 503
            RP+ ++KP A+K    P   ++P P++
Sbjct: 987  RPVVQNKPAATKPVSMPAAKSKPAPMA 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,465
Number of Sequences: 5004
Number of extensions: 59903
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)