Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d06r
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760...    32   0.56 
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362...    30   3.0  
02_02_0549 + 11410129-11412180                                         29   5.2  
06_03_1234 - 28586365-28587973,28590411-28590694                       29   6.9  

>08_01_0786 -
           7606984-7607037,7607235-7607379,7608103-7608163,
           7608273-7608465
          Length = 150

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 615 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 740
           E    +  AP    LPF S + + AR G APAL+A P   LV
Sbjct: 2   EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43


>10_08_0403 -
           17635530-17635578,17635737-17635820,17636110-17636219,
           17637507-17637638,17638497-17638576,17638877-17639008,
           17639534-17639648,17640244-17640286,17640359-17640493,
           17641347-17641414,17641473-17641478
          Length = 317

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -2

Query: 368 LGLGCRLREDLRCC--FGSQQ-----PTKTPSEPPGHHQRRLRPHVRKLCDHWL 228
           LGLG  LR  L CC  +GS++     P      P G+H  RL P V  LC  W+
Sbjct: 128 LGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV--LCLGWV 179


>02_02_0549 + 11410129-11412180
          Length = 683

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 559 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 416
           LA     +F+G   V ++S HL         N D   IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176


>06_03_1234 - 28586365-28587973,28590411-28590694
          Length = 630

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
 Frame = -3

Query: 724 GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC---------WRTRNAQA 572
           G+ A AG  P L  + ++L  GR  I G S+     S +  +          WR  N   
Sbjct: 527 GNPAGAGPPPRLDHVAVSLPGGRVLIFGGSV-AGLHSASQLYLLDPTEEKPTWRILNVPG 585

Query: 571 RQFTLAFGTANIFSGGTR 518
           R    A+G +    GGT+
Sbjct: 586 RPPRFAWGHSTCVVGGTK 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,529,700
Number of Sequences: 37544
Number of extensions: 414169
Number of successful extensions: 1655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)