Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d01r
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 28 0.61
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 2.5
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 3.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 3.3
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 25 4.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 4.3
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 4.3
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.7
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 5.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 24 7.6
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 24 10.0
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 24 10.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 10.0
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 10.0
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 24 10.0
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 0.61
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 105 VRKGSPTTRCRLGDRCRSEPMRCHCHHCKY 194
V+ G+ TR ++GDR + M C +C+Y
Sbjct: 76 VKVGAGVTRLKIGDRVGVKWMNSSCGNCEY 105
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 381 VAGWGRVRANGALSTNLLEINVRTIDGQT 295
++GW V A + +LL + V TI+G+T
Sbjct: 208 LSGWNPVPAEFVIQGHLLYLTVLTIEGKT 236
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 3.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 165 MRCHCHHCKYQFLLRGMCRARYEVR 239
++C CH Y++ R M R+ E R
Sbjct: 425 VKCTCHDATYEYTRRKMIRSLIEFR 449
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 241 CRTSYRALHIPRRRNWYLQW*QWQRIGSDRQRSP 140
CR I + NW L QWQ I SDRQ P
Sbjct: 130 CRQPCARASIAKDMNWDLT--QWQPIISDRQFLP 161
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 4.3
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -3
Query: 387 VRVAGWGRVRANGALSTNLLEINVRTIDG--QTCVRTAAQAAIDLNVRAPPVEPHIELCT 214
+R WG ++ A +T L++NV I G VR + + A DL + IE+
Sbjct: 236 IRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDW 295
Query: 213 FHAEGTGTCN 184
+ T T N
Sbjct: 296 HEDDDTPTLN 305
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.0 bits (52), Expect = 4.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 58 PGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRF 237
P + AD++ + + +P+H + + G S TSS +E ++L
Sbjct: 32 PNSDQADNENSDAKAHQPQHSPQHSTENQGHTGTSD---------TSSLEMELSKLHPES 82
Query: 238 DRRS-PHVKVNGRLGRSPHASLTINGSHIDLQ 330
+R PH + R RSP AS+ SH+ L+
Sbjct: 83 KQRQLPHSPEHER-SRSPIASVVSYRSHMTLE 113
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 261 GQWPPGPQSSRKSDHQWFSH*SPEDSWREH 350
GQWP +SS+ S H F E W +H
Sbjct: 70 GQWPFSRRSSQSSSHPVFE----ETHWSKH 95
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 127 HDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRS 249
+DA PSQ +V I S C+ +L+ RS
Sbjct: 15 NDAQANDMRSPSQLPTSVNIEDPSKLCISSEKLNTPMHNRS 55
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -3
Query: 186 NGDSGS--ALARTDSGLQVGIVSW 121
N DSGS ALA TD V V W
Sbjct: 206 NADSGSVSALAETDESTYVASVKW 229
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 88 VRQSQRLPVLAATKHQLIKLYFNQEYHDF 2
+R+ +RL TK QLI F E+H+F
Sbjct: 560 LRRKERLESHLYTKVQLITPEFYSEHHEF 588
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 264 QWPPGPQSSRKSDHQWF 314
+W PG S HQWF
Sbjct: 277 KWSPGKYDVFGSSHQWF 293
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 115 EAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELD 228
E P DA+ ET PS+ A + TS++ + A LD
Sbjct: 526 EPPMQDAEPETTEDPSKLFADI-FDFTSNYFIPSALLD 562
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/75 (20%), Positives = 30/75 (40%)
Frame = +1
Query: 130 DADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNGRLGRSPHASLTIN 309
+A + + PS+ TV + + + + PHV G LG A ++
Sbjct: 507 EAAIHVTLNPSKALTTVYLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIAGPQLS 566
Query: 310 GSHIDLQKIRGESTV 354
+I+ +I ++ V
Sbjct: 567 SGYINRPEINAKAFV 581
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 156 SEPMRCHCHHCKYQFLLRGMC 218
S+P+ +CH C +F G C
Sbjct: 3 SQPVIWYCHSCSNEFQRPGNC 23
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 10.0
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 37 LADVLLQPGPEGADSD----EHVRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSF 204
LA Q P G SD +H + A + RH + A + ++T + A+
Sbjct: 410 LASNSAQAHPMGQQSDSNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRYR 469
Query: 205 CVECAE 222
C EC +
Sbjct: 470 CTECLQ 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,468
Number of Sequences: 5004
Number of extensions: 29269
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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