Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d01r
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 42 1e-04
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 40 7e-04
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 32 0.17
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 31 0.30
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 30 0.70
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 30 0.70
Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical pr... 29 0.93
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 1.2
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 1.2
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 1.2
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 1.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 1.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 1.2
U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 28 2.8
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine re... 27 5.0
AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical ... 27 5.0
Z78019-8|CAJ85784.2| 195|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical p... 27 6.5
Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical pr... 27 6.5
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 27 6.5
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 27 6.5
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 27 6.5
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 27 6.5
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 26 8.7
AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear recep... 26 8.7
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 26 8.7
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 26 8.7
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 42.3 bits (95), Expect = 1e-04
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 381 VAGWGRVRANGALST-NLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIELCTFHA 205
V GWG +LS L EI+V + C + P + LC ++
Sbjct: 179 VTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIG---RIHLPSM-----LCAGYS 230
Query: 204 EGT-GTCNGDSGSAL--ARTDSGLQVGIVSWGFPCAR-GAPDMFVRVSAFRSWL 55
G +C GDSG L AR G+VSWG CAR G P ++ V + +W+
Sbjct: 231 YGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -3
Query: 219 CTFHAEG-TGTCNGDSGSALA-RTDSGLQV--GIVSWGFPCA-RGAPDMFVRVSAFRSWL 55
C + EG +C GDSG A R + G V G++SWG CA + P ++ V+ + SW+
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 256
Query: 54 QQNIS 40
I+
Sbjct: 257 SAIIN 261
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -3
Query: 234 PHIELCTFHAEGTGTCNGDSGSALA--RTDSGLQ--VGIVSWGFPCAR 103
P CT E C+GDSG L ++DS + + IVS+G C +
Sbjct: 255 PFDSFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDCVQ 302
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 31.1 bits (67), Expect = 0.30
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 219 CTFHAEGTGTCNGDSGSALARTDS----GLQVGIVSWGFPC 109
CT +C+GDSGS + RT + VG++S G PC
Sbjct: 197 CTSAVNRGLSCDGDSGSGVVRTSDTRNVQVLVGVLSAGMPC 237
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 29.9 bits (64), Expect = 0.70
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 90 CQELPVRKGSPTTRCRLGDRCR-SEPMRCHCH-HCKYQFLL 206
CQ LP G CR D+C S P C+ + HC Y +L
Sbjct: 1090 CQCLPGFSGDGFINCRGADQCNPSNPSACYQNAHCVYDAIL 1130
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 29.9 bits (64), Expect = 0.70
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +3
Query: 177 CHHCKYQFLLRGMCRARYEVRQEEPSR*GQWPPGPQ---SSRKSDHQ 308
CH+C QF RG + + E QW G Q SS KS H+
Sbjct: 279 CHYCTRQFSQRGALKTHMRLHTGERPFVCQWECGKQFASSSAKSHHE 325
>Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical
protein C02B4.2 protein.
Length = 396
Score = 29.5 bits (63), Expect = 0.93
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 GDRCRSEPMRCHCHHCKY-QFLLRGMCRARYEVRQ 242
GD + MRC C HC+Y + ++ GM R + +
Sbjct: 71 GDCIIDKSMRCSCRHCRYKKCIIAGMDRGELSMER 105
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2295 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2341
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2295 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2341
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 46 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 186
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical
protein F32E10.5 protein.
Length = 549
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 129 RCRLGDRCRSEPMRCHCHHCKYQFLLRGMCRARYEVRQEEPSR*GQWPPGPQSSRKSDHQ 308
RC++ C +EP + H KY+F+ MC R+ +PS+ G W P + +
Sbjct: 219 RCQI-TTC-TEPFQIVLCHPKYEFM--NMCSFLLAPRRGQPSQEGVWIPREIAKQLEREN 274
Query: 309 WFSH*SPEDS 338
F +DS
Sbjct: 275 GFERNDYDDS 284
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 240 VEPHIELCTFHAEGTGTCNGDSGSALARTDSGLQVGIVSWGF 115
+EPH++ C F+ +GT C+ +++ + + + +VS GF
Sbjct: 571 IEPHLKTCGFNEQGTFKCD----MSISEVFTQIPIVLVSAGF 608
>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
protein F37D6.1 protein.
Length = 1227
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 91 VRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 270
VR P R + + GPS + V I S ++CV C+ D + +NG
Sbjct: 605 VRPQPLPRTSSKSTIPYGKTSGPSSTSTQVGIFSYHTYCVHCSVDQEVSDDLKEKIPLNG 664
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -3
Query: 351 GALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIELCTFHAEGTGTCNGDSG 172
G +T+ ++ + D C+ A I+ NV P P+ E+C +GT +S
Sbjct: 2677 GLTTTSQASTSINSCDTINCID--ANTMINKNVTVGPSTPYSEICIACEQGTFQNVSNSD 2734
Query: 171 SALARTD 151
S + +D
Sbjct: 2735 SCIPCSD 2741
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 27.5 bits (58), Expect = 3.7
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 357 ANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIELCTFHAEGTGTCNGD 178
+N L T +LE V + D T + + + I +N +E H+E+CT +E +
Sbjct: 186 SNSGLIT-VLERGVSSED--TLIPSVRRGVIPVNTLRYQIEKHLEMCTPASEQLSKSSDP 242
Query: 177 SGSALARTDSGLQV 136
+ S++ G+QV
Sbjct: 243 NISSMYVFHQGIQV 256
>AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 71 protein.
Length = 323
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 151 VGPSQCAATVTIASTSSFCVECAELDMRFDRR 246
VGP C AT + +TS V + L M + RR
Sbjct: 83 VGPQACLATYNLLNTSGCLVVASLLHMMYYRR 114
>AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical
protein Y45G12C.9 protein.
Length = 323
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 151 VGPSQCAATVTIASTSSFCVECAELDMRFDRR 246
VGP C AT + +TS V + L M + RR
Sbjct: 83 VGPQACLATYNLLNTSGCLVVASLLHMMYYRR 114
>Z78019-8|CAJ85784.2| 195|Caenorhabditis elegans Hypothetical
protein ZK863.9 protein.
Length = 195
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 210 HAEGTGTCNGDSGSALARTDSGLQVGIVSWGFPCARGAPDMFVRVSA 70
+ GTGT S S + + G Q G V +G C R D+ + SA
Sbjct: 35 YPSGTGTTISTSVSTVEPCNVGCQNGWVPYGGNCYRKMVDVLTQESA 81
>Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical
protein R04B5.4b protein.
Length = 456
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +3
Query: 132 CRLGDRCR-SEPMRCHCHHCKY 194
CR G C S +RC C C+Y
Sbjct: 83 CRAGRNCEVSSNIRCMCRSCRY 104
>Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical
protein R04B5.4a protein.
Length = 453
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +3
Query: 132 CRLGDRCR-SEPMRCHCHHCKY 194
CR G C S +RC C C+Y
Sbjct: 83 CRAGRNCEVSSNIRCMCRSCRY 104
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 61 GPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFD 240
GPE + RSS ++ A + + + C + T+ TS CVE + RF+
Sbjct: 625 GPEIEGLKQRSRSSSPDQKELGTPAQIGSPQTNTPCRDSPTLLITSDDCVEPLQFGRRFE 684
Query: 241 RR 246
+R
Sbjct: 685 KR 686
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 123 TTRCRLGDRCR-SEPMRCHCHHCKYQFLLR-GMCR 221
T C+ +C + +RC C HC+++ L+ GM R
Sbjct: 51 TFSCQFQGKCPVDKSIRCACRHCRFEKCLQVGMDR 85
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 123 TTRCRLGDRCR-SEPMRCHCHHCKYQFLLR-GMCR 221
T C+ +C + +RC C HC+++ L+ GM R
Sbjct: 51 TFSCQFQGKCPVDKSIRCACRHCRFEKCLQVGMDR 85
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 55 QPGPEGADSDEHVRSSPCAREAPRHDADLETAVGP 159
QPGP+G D D V + P ++ GP
Sbjct: 111 QPGPDGVDGDNGVDGDVVIHDMPNPKECIKCPAGP 145
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 56 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 95
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 71 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 110
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 47 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 86
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 47 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 86
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 207 AEGTGTCNGDSGSALARTDSGLQVGIVSWGFPCAR 103
A G +G +G A +G+ VGIVS G PC +
Sbjct: 98 APGAPGDDGHAGEAGKPGTAGVAVGIVSEGGPCIK 132
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +3
Query: 90 CQELPVRKGSPTTRCRLGDRCRSEPMRCHCHHCKYQFLLRGMCRARYEVRQEEPSR*G 263
C L +GSP RC++ H CK +G+C R + +P R G
Sbjct: 479 CARLQCERGSPLRIGEEAQRCQNNAQCPSSHECKAD---QGVCCPRKQTICAQPLRIG 533
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 207 AEGTGTCNGDSGSALARTDSGLQVGIVSWGFPCAR 103
A G +G +G A +G+ VGIVS G PC +
Sbjct: 98 APGAPGDDGHAGEAGKPGTAGVAVGIVSEGGPCIK 132
>AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 381
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 41 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 80
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 46 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 85
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 CRLGDRCRSEP-MRCHCHHCKYQFLLR-GMCRARYEVRQE 245
CR RC + RC C +C++Q ++ GM R + ++
Sbjct: 44 CRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERD 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,241,664
Number of Sequences: 27780
Number of extensions: 199766
Number of successful extensions: 688
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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