Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d01r
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    40   8e-06
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    24   0.74 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.74 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   3.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 40.3 bits (90), Expect = 8e-06
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
 Frame = -3

Query: 396 GVPVRVAGWGRVRANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIELC 217
           G  V V GWG    NG LS  L +  +  +    C +      ++             +C
Sbjct: 289 GSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVNA------------MC 336

Query: 216 TFHAEGTGTCNGDSGSALA----RTDSGLQVGIVSWGFPCARGAPDMFVRVSAFRSWL 55
            + A+G   C  DSG  +     RT   + +GI+SWG  C +  P+   +V ++  W+
Sbjct: 337 AY-AKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK-YPNGNTKVGSYIDWI 392


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 49  LLQPGPEGADSDEHVRSSPCAREAPRHDADL 141
           +L P  E  D+D+   +  C R AP+   +L
Sbjct: 22  ILSPSSEPLDNDKEQSAQVCYRGAPQDSENL 52


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 49  LLQPGPEGADSDEHVRSSPCAREAPRHDADL 141
           +L P  E  D+D+   +  C R AP+   +L
Sbjct: 22  ILSPSSEPLDNDKEQSAQVCYRGAPQDSENL 52


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +3

Query: 174 HCHHCKYQFLLRGMCRARYEVRQEE 248
           HC HC  QF+     R    V   E
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGE 63


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +3

Query: 177 CHHCKYQFLLRGMC 218
           CH CKY   +   C
Sbjct: 43  CHKCKYGIAMSSAC 56



 Score = 20.2 bits (40), Expect = 9.1
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = -1

Query: 167 HWLGPTAVSKSASCRGASLAHGELLTCSSESAPSGPGCN 51
           ++LG  A     SC        E   CS  S P  P  N
Sbjct: 74  NYLGICAEGMQCSCNKCIGCSAEKFECSKTSNPCLPHRN 112


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 170 AHWLGPTAVSKSASCRGASLAHGELLTCSSESAP 69
           AH  GP+ V +  S    S + G  L C++  +P
Sbjct: 25  AHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSP 58


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 170 AHWLGPTAVSKSASCRGASLAHGELLTCSSESAP 69
           AH  GP+ V +  S    S + G  L C++  +P
Sbjct: 25  AHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,870
Number of Sequences: 438
Number of extensions: 2221
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)