Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d01f
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 28 0.75
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 3.0
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 4.0
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 4.0
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 25 5.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 5.3
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 5.3
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.0
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.3
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 24 9.3
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 0.75
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 294 VRKGSPTTRCRLGDRCRSEPMRCHCHHCKY 205
V+ G+ TR ++GDR + M C +C+Y
Sbjct: 76 VKVGAGVTRLKIGDRVGVKWMNSSCGNCEY 105
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 18 VAGWGRVRANGALSTNLLEINVRTIDGQT 104
++GW V A + +LL + V TI+G+T
Sbjct: 208 LSGWNPVPAEFVIQGHLLYLTVLTIEGKT 236
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 234 MRCHCHHCKYQFLLRGMCRARYEVR 160
++C CH Y++ R M R+ E R
Sbjct: 425 VKCTCHDATYEYTRRKMIRSLIEFR 449
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 158 CRTSYRALHIPRRRNWYLQW*QWQRIGSDRQRSP 259
CR I + NW L QWQ I SDRQ P
Sbjct: 130 CRQPCARASIAKDMNWDLT--QWQPIISDRQFLP 161
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 5.3
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 12 VRVAGWGRVRANGALSTNLLEINVRTIDG--QTCVRTAAQAAIDLNVRAPPVEPHIELCT 185
+R WG ++ A +T L++NV I G VR + + A DL + IE+
Sbjct: 236 IRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDW 295
Query: 186 FHAEGTGTCN 215
+ T T N
Sbjct: 296 HEDDDTPTLN 305
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.0 bits (52), Expect = 5.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -2
Query: 341 PGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRF 162
P + AD++ + + +P+H + + G S TSS +E ++L
Sbjct: 32 PNSDQADNENSDAKAHQPQHSPQHSTENQGHTGTSD---------TSSLEMELSKLHPES 82
Query: 161 DRRS-PHVKVNGRLGRSPHASLTINGSHIDLQ 69
+R PH + R RSP AS+ SH+ L+
Sbjct: 83 KQRQLPHSPEHER-SRSPIASVVSYRSHMTLE 113
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 138 GQWPPGPQSSRKSDHQWFSH*SPEDSWREH 49
GQWP +SS+ S H F E W +H
Sbjct: 70 GQWPFSRRSSQSSSHPVFE----ETHWSKH 95
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 272 HDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRS 150
+DA PSQ +V I S C+ +L+ RS
Sbjct: 15 NDAQANDMRSPSQLPTSVNIEDPSKLCISSEKLNTPMHNRS 55
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = +3
Query: 213 NGDSGS--ALARTDSGLQVGIVSW 278
N DSGS ALA TD V V W
Sbjct: 206 NADSGSVSALAETDESTYVASVKW 229
>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 353 HQLIKLYFNQEYHDFFVN 406
H+LI YF YHD V+
Sbjct: 12 HRLINFYFYPSYHDTVVH 29
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 311 VRQSQRLPVLAATKHQLIKLYFNQEYHDF 397
+R+ +RL TK QLI F E+H+F
Sbjct: 560 LRRKERLESHLYTKVQLITPEFYSEHHEF 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,838
Number of Sequences: 5004
Number of extensions: 33979
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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