Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d01f
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001... 29 1.3
02_03_0134 - 15596379-15597689 29 1.7
12_02_1202 - 26957254-26957778 28 3.0
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 28 3.0
02_05_0310 + 27769988-27770830 28 3.0
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912 28 3.0
10_08_1047 - 22549376-22551271 27 5.2
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 27 5.2
02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253 27 5.2
01_05_0091 + 18048595-18050559 27 5.2
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 27 6.9
11_04_0101 - 13469731-13469898,13470163-13470279,13470528-134707... 27 6.9
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 27 6.9
06_03_1242 - 28618752-28618980,28619457-28619797 27 6.9
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 27 6.9
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 6.9
03_05_0953 + 29111030-29111105,29112250-29113520 27 6.9
01_01_0096 + 737928-739894,740164-740221 27 6.9
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399 27 9.1
05_05_0259 + 23658078-23658213,23658237-23658631 27 9.1
04_04_0336 + 24500665-24502647 27 9.1
02_02_0476 - 10751647-10753323 27 9.1
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495 27 9.1
>06_03_1476 -
30399317-30399347,30399636-30399722,30400035-30400192,
30400276-30400497,30400744-30400881,30400977-30401105,
30401346-30401369,30401569-30401614,30401692-30401773,
30401836-30401955,30402039-30402072
Length = 356
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 266 ADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 129
A + VG A++ + SSF +EC+++ + +++ H K+ G
Sbjct: 293 AQSDKKVGQKHTGASIFVLIYSSFAMECSKMMVELHQKAGHGKLTG 338
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 308 VRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSF 195
V SSP + +P HDA A PS +T T S S+F
Sbjct: 38 VPSSPDRKLSPSHDASSSNAYRPSSSFSTRTGTSRSTF 75
>12_02_1202 - 26957254-26957778
Length = 174
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CTFHAEGTGTC-NGDSGSALARTDSG 254
C+F+ GTG+C GD AL+ T SG
Sbjct: 75 CSFNGAGTGSCATGDCAGALSCTLSG 100
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 335 PEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIAST 204
PEG + D + S C R P L+TA+G A TVT+A+T
Sbjct: 346 PEGRNGDGRKKGSGCKRHFP-----LDTALGVG-LALTVTLATT 383
>02_05_0310 + 27769988-27770830
Length = 280
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 186 FHAEGTGTCNGDSGSALARTDSGLQVGIVSWG 281
F +G G C +S S L R S L+ + SWG
Sbjct: 79 FDHDGGGGCGPESFSGLLRELSELEQSVASWG 110
>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
Length = 487
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 166 LISSSAHSTQKELVLAMVTVAAHWLGPTAVSKSASCRGASLAHGELLTCSSESA 327
L+ SSA S L + AA WL + S+S A+ A G L S +A
Sbjct: 67 LVGSSAASRPDMLASVLSHYAAKWLPDVVAASSSSSSPATSASGRFLPPESPTA 120
>10_08_1047 - 22549376-22551271
Length = 631
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 267 CRLGDRCRSEPMRCHCHHCKYQFLLRGMCRAR 172
C L D+ + M + C Y +LRG+CR R
Sbjct: 507 CMLFDKMKRSGMASNT--CTYNIMLRGLCRTR 536
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -2
Query: 341 PGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIAST 204
P PE A SDE + A P DA E A P + A + A T
Sbjct: 119 PVPEAASSDESSTPAEAAPSDPAADAAAEAAPAPPRRPAELLRAYT 164
>02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253
Length = 231
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 341 PGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIAST 204
P D+D+ S P P AD P+ CAA +AST
Sbjct: 173 PADPADDADDSDPSDPAVDADPSDPADDADDSDPADCAADSDVAST 218
>01_05_0091 + 18048595-18050559
Length = 654
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 184 HSTQKELVLAMVTVAAHWLGPTAVS 258
HS KELV M TV +H +GP +++
Sbjct: 361 HSRVKELVKNMQTVLSHEIGPVSLN 385
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 323 DSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVE 186
D+DE + C +AP D D GP+Q +A + S CVE
Sbjct: 457 DTDEMSPKAICDSDAPESDMDFPPGFGPNQESA----EHSHSACVE 498
>11_04_0101 -
13469731-13469898,13470163-13470279,13470528-13470702,
13472702-13472804,13472847-13472971,13473252-13473457
Length = 297
Score = 27.1 bits (57), Expect = 6.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 347 LQPGPEGADSDEHVRSSPCAREA-----PRHDA-DLETAVGPSQCAATVTIASTSSFCVE 186
L P P AD++E V++ A A PR DL+ + P QC AT + + FC+
Sbjct: 26 LPPPPPEADAEE-VKAEALALMAAHPVLPRLVVFDLDHTLWPFQCDATTSGIGSYMFCIT 84
Query: 185 CAELDM 168
L M
Sbjct: 85 TESLSM 90
>11_01_0320 -
2406706-2406943,2407297-2407385,2407463-2408335,
2408882-2409310
Length = 542
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 TGTCNGDSG-SALARTDSGLQVGIVSWGFPCARGAPDMFVR 320
TGT GD+ A+A + L GI S F CARGA D +VR
Sbjct: 84 TGTVLGDAVVGAMASSWRLLLQGITSLVFLCARGA-DEYVR 123
>06_03_1242 - 28618752-28618980,28619457-28619797
Length = 189
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 208 LAMVTVAAHWLGPTAVSKSASCRGASLAHGELLTCSSESA--PSGPGCNKTSAN 363
LAMV +AA L + V + + + G+ + SA PSGP N + N
Sbjct: 63 LAMVALAAGVLALSPVDDAMAAKSGGRVGGQAFRSAPRSAPRPSGPRINNSRTN 116
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 105 CVRTAAQAAIDLNVRAPPVEPHIELCTFHAEGTGTCNGDSGSALARTDSGLQVGIVSWGF 284
C+ QA + + A +P ++ H EG G + SGS+L T S + S
Sbjct: 352 CLEENQQANLAQGLTAAIGQPQLQQNWIHQEGNGLSDVFSGSSLTNTLSSTLQRVPSSSL 411
Query: 285 P 287
P
Sbjct: 412 P 412
>04_04_0751 -
27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 344 QPGPEGADSDEHVRSSPCARE--APRHDADLETAVGPS 237
+P P G DSDE + P A E A + D +T+ G S
Sbjct: 14 EPPPPGQDSDEQFSAVPLADEVRAEGSELDPDTSAGTS 51
>03_05_0953 + 29111030-29111105,29112250-29113520
Length = 448
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 319 LTNMSGAPRAQGKPHDT 269
L +M+G PRA GKP DT
Sbjct: 294 LRSMAGTPRAPGKPVDT 310
>01_01_0096 + 737928-739894,740164-740221
Length = 674
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CTFHAEGTGTC-NGDSGSALARTDSG 254
C+F A G G+C GD G L +SG
Sbjct: 83 CSFDANGNGSCQTGDCGGVLKCKNSG 108
>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
Length = 595
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 176 LDMRFDRRSPHVKVNGRLGRSPHASLTINGSHIDLQKIRGES 51
LD FD +NG+LG + S T+ S + L RGES
Sbjct: 184 LDGNFDDNPLSATINGKLGDLSNCSSTVEESFV-LDVKRGES 224
>05_05_0259 + 23658078-23658213,23658237-23658631
Length = 176
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 276 TTRCRLGDRCRSEPMRCHCHH 214
+T+C LGDR RS CH H
Sbjct: 98 STQCLLGDRRRSATTACHHLH 118
>04_04_0336 + 24500665-24502647
Length = 660
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 265 ASCRGASLAHGELLTCSSESAPSGP 339
A+C G L HG+ + C++E APS P
Sbjct: 594 AACAGL-LMHGDGIECAAEVAPSVP 617
>02_02_0476 - 10751647-10753323
Length = 558
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 326 ADSDEHVRSSPCAREAPRHDADLETAV 246
+D+ EH ++ A E P HD LET V
Sbjct: 327 SDNGEHASAAAPATEPPVHDVFLETLV 353
>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
Length = 344
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 392 HGILD*STV*LADVLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQC 231
HG D +V D+L+ GA SDE + +PCAR H L +A + C
Sbjct: 98 HG--DIGSVFPGDLLVLLSKSGA-SDELLALAPCARAKGAHLISLTSAASGADC 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,717
Number of Sequences: 37544
Number of extensions: 281968
Number of successful extensions: 909
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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