Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c24r
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   2.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.5  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    26   6.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = -3

Query: 141 LRTFC--CHH----SVKFHLFICNFRYVLYGV 64
           LR+ C  CHH     VK HLF C  + + YG+
Sbjct: 99  LRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGL 130


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 236  DVFV*ILIHLTTLNFGNLTRNESTKSFFGKYCEVFAVPLWNRLQ 367
            D+F  + I  T  N G   +N   K F      V AVPL N LQ
Sbjct: 1228 DIFAGLFIGFTFYNQGLGVQNIQNKLFAVFMATVLAVPLINGLQ 1271


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 287 LTRNESTKSFFGKYCEVFAVPL 352
           +TRNE+ + FF K+C V  VP+
Sbjct: 58  MTRNEA-EDFFFKFCTVICVPV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,292
Number of Sequences: 5004
Number of extensions: 73434
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)