Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c24r
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    29   6.2  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    29   6.2  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +1

Query: 517 FTTISMHSTLDSI--YYQISYKQNLNIYVR--SEDFDNFRHYWHLCYKLQ 654
           F +++M S  +SI  Y+ ++   + N+Y +  ++  D F H W LC ++Q
Sbjct: 93  FVSMNMDSAWNSIFLYHNMAEHSDNNMYFKMLNQAEDIFTHTWSLCVEMQ 142


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 429 KLIYKTRKI--LYKKQQQVLFRLKMI*KQILIYYNQYAQHTGFYLLPDFLQTKSKYICT 599
           K+++K +KI  LY+K +Q     +M+ K I +  +   QH  F  L  F +  S Y+ T
Sbjct: 671 KVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHT 729


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
            protein C09E7.7 protein.
          Length = 995

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 429  KLIYKTRKI--LYKKQQQVLFRLKMI*KQILIYYNQYAQHTGFYLLPDFLQTKSKYICT 599
            K+++K +KI  LY+K +Q     +M+ K I +  +   QH  F  L  F +  S Y+ T
Sbjct: 878  KVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHT 936


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 517 FTTISMHSTLDSI--YYQISYKQNLNIYVR--SEDFDNFRHYWHLCYKLQ 654
           F +++M S   SI  Y+ ++   + N+Y +  ++  D F H W LC ++Q
Sbjct: 93  FLSMNMDSAWSSIFLYHNMAQHSDNNMYFKMLNQAEDIFTHTWSLCVEMQ 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,502
Number of Sequences: 27780
Number of extensions: 397958
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)