Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c24f
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 247 1e-66
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 29 0.70
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 1.2
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 2.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.9
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 4.9
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 26 4.9
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 26 6.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.6
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 8.6
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 8.6
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 247 bits (605), Expect = 1e-66
Identities = 111/196 (56%), Positives = 147/196 (75%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 337
S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95
Query: 338 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 517
+EGIRFRG +IPECQ+ LP + G++PLPE LFWLLVTG+IPT +Q +ALS +WAAR++
Sbjct: 96 PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQ 155
Query: 518 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 697
LP V +++ P LHPM+QFS AVTAL +S FAKAY G++K YW+Y YED M+LI
Sbjct: 156 LPKFVEELIDRCPPTLHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYEDCMDLI 215
Query: 698 AKLPVIAATIYRNVYR 745
AK IA IYRN+YR
Sbjct: 216 AKTVPIAGRIYRNLYR 231
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 248 NHASFGIRGSSLVPWESFPGEYFLNSSVQRLDLEVELSQSD 126
N+ S G+RG ++ + +PG SV L++++ L + D
Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDIVLGEMD 634
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 146 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 268
LR L E NL+ + ++ +EQE+ + +++ S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 359 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 466
+G +PE + LP G P G+FWL TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 161 AEQTNLKSILQEKIPKEQEKIREFRKKHG 247
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 348 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 244
P S+ VS TRP IP+ PP + +S + P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 390 CCWHSGMDRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 244
C W DRP R + PSSA+ T PL + PY+ S SPT++ P
Sbjct: 51 CIWP---DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 467 TEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHP 571
T A+ K +K R +P H +T L N+ KL+P
Sbjct: 69 TSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 300 ESKVWFGKPLCWM-----PMKES-VSVVYPSLS---ANSNCPRLRVEKNHYPKVFSGFSS 452
E++ + GK +C++ P++ S + V++ ++S NS R R N PK F
Sbjct: 41 EAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLR 100
Query: 453 LAIYP 467
+ +YP
Sbjct: 101 VMLYP 105
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 194 PGEYFLNSSVQRLDLEVELSQSDMLSA 114
P E + N VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 146 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 265
L+G E+ I E + +E++ FRK+ S++ E
Sbjct: 436 LKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 140 VLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 244
V+L A + S +E IPK++ E RKKH
Sbjct: 235 VILGEDEAMEEEALSEAEENIPKKKPDFNELRKKH 269
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 662 WEYVYEDTMNLIAKLPVIAATIYRN 736
W Y+D N +AK+ V TIY++
Sbjct: 430 WSNTYKDLPNKLAKVKVSDRTIYKS 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,288
Number of Sequences: 5004
Number of extensions: 61845
Number of successful extensions: 257
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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