Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c21r
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 234 2e-62
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.077
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 30 0.54
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 29 0.95
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 5.1
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 5.1
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.7
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 8.8
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 8.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 8.8
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 234 bits (572), Expect = 2e-62
Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 3/238 (1%)
Frame = -3
Query: 872 MGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFA 696
MGN AE A++ I R QD +A++SYKR+ A KAF E+VPV VP RG P +
Sbjct: 159 MGNAAELCAEEHSIDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVT 218
Query: 695 EDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIAR 516
EDEE K +N +K + VF K NGTVTA NASTLNDG K L +KP+A+
Sbjct: 219 EDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGASALVLMSAAKVKELGLKPLAK 277
Query: 515 IVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDP 336
I+G+ + DP F +P++AIPK L+ G+ V +EINEAFSVVAVAN K+LGLDP
Sbjct: 278 IIGWGEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAFSVVAVANTKILGLDP 337
Query: 335 SKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEKM 168
++N++GG V++GHP+G SG+RI+ L + L K + GVA++CNGGGGASS++IE++
Sbjct: 338 ERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.077
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Frame = +1
Query: 307 TAPPCTLIFDGSNPNNF*FATATTLKASFISHNATSSFL--TPVFSNNLGMA--TAGAIG 474
+A P + S+ + A+++T +S S + TSS L + + S++L + T+ ++
Sbjct: 101 SASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLA 160
Query: 475 KSMGSHSPSANPTIRAIGLTFNLLAAS-AVINTKAAAPSFNVEALPAVTVPFSFWNTVDN 651
S + + SA PT A + + AAS + ++ A+ S N T N
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
Query: 652 FVNFSKL--TLLYSSSSANITGAPL 720
S L + L S++SA T + +
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSI 245
Score = 31.5 bits (68), Expect = 0.18
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +1
Query: 364 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 543
+T++T +S S ATS+ TP+ S N AT+ + +S SA + N
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANS 396
Query: 544 LAASAVINTKAAAPSFNVEA-LPAVTV---PFSFWN-TVDNFVNFSKLTLLYSSSSANIT 708
+++V +T APS+N + LP +V P S N T + + L+ + S+++ + +
Sbjct: 397 TTSTSVSST---APSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSAS 453
Query: 709 GAPL 720
PL
Sbjct: 454 STPL 457
Score = 28.3 bits (60), Expect = 1.7
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 364 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 543
AT+++L ++ S++ATSS L N+ ATA + S + S SA + +L
Sbjct: 176 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSS--------SL 227
Query: 544 LAASAVINTKAAAPSFNVEALPAVTVPFSFWN--TVDNFVNFSKLTLLYSSSSANITGAP 717
++S T A A S ++ + + + P + N T + + + Y++SS + P
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 452 IPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSL 300
+ KL +TG + ++L ++NE S KL DPS++ + G V L
Sbjct: 628 LTKLNYETGKTENRLSLLQLNEQLSCSPADRAKLTLFDPSRLLIFKGVVKL 678
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +1
Query: 349 NNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSH 492
N F F TA A N S LTPVFS + MA+A A ++ +H
Sbjct: 259 NQFSFNTAANPFAFAKKENEESKPLTPVFSFSTTMASADASKETKQTH 306
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 371 AVANQKLLGLD-PSKINVHGGAVSLGHPIGMSGARIVVHLCHALK 240
+++++ LL +D P+ + + G L + S A + VH+CHA+K
Sbjct: 194 SMSSRSLLIMDIPTTMRSNNGLSILASRLKSSEAPMHVHICHAIK 238
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +1
Query: 328 IFDGSNPNNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSAN 507
I+ ++ ++ +TAT +S S +++SS TP+ S+++ + + + S+ S S S++
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPI-SSSITSSISSSASSSVSSSSASSS 191
Query: 508 PTI 516
+I
Sbjct: 192 GSI 194
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 707 VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 582
+IF+ED+E ++F++F S + N + AS L G
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 821 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEK 660
++ +YA +S + A YE K + L+ +PV Q VIF + Y RV EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 293 PIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSVMIE 174
P G+SG I+V LC A E +I G G +S+ IE
Sbjct: 229 PKGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIE 268
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 651 FCKLFKINSFILFIFSKYYRSPSFLWNGYWY 743
F KLF+I+ +IL +FS Y F W W+
Sbjct: 73 FSKLFRISLYILGVFSLY----MFRWAIAWF 99
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 208 LQIEATPFSPFFKAWH-RCTTMRAPDIPIG*PKLTAPPCTLIFDGSNPNNF 357
L +E +P PF+K WH R T+ ++ P+ + +F G NP +F
Sbjct: 285 LPLELSPGCPFYKIWHIRNTSCQSWPSPL---YVKFNGGDKLFPGDNPYSF 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,453
Number of Sequences: 5004
Number of extensions: 70425
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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