Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c19r
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 33 0.38
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 31 1.5
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 30 2.0
05_04_0263 + 19534563-19535522 29 3.6
03_06_0692 + 35585445-35586008,35586222-35586560 29 4.7
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435... 29 6.2
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 29 6.2
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 6.2
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 8.2
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 28 8.2
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 28 8.2
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 824 FEVIAPSLPGFVFSEAPTRPGLDTYEMAIIMRNLMRRL---GYTQYYIQGGDFGHMIGSH 654
F +AP L G+ S+AP PG D+Y + ++ +L+ + G + ++ D+G +
Sbjct: 57 FRAVAPDLRGYGDSDAP--PGRDSYTVLHLVGDLVALIADVGQPRVFVAAHDWGAAVAWQ 114
Query: 653 IATIFPSEVLGF 618
+ + P V F
Sbjct: 115 LCLLRPDLVTAF 126
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 824 FEVIAPSLPGFVFSEAPTRPGLDTYEMAIIMRN---LMRRLGYTQYYIQGGDFGHMI 663
F +AP L G+ S+AP G D+Y + ++ + L+ LG Q ++ G D+G ++
Sbjct: 57 FRAVAPDLRGYGDSDAP--QGRDSYTVLHLVGDLVALIADLGRPQVFVAGHDWGAVV 111
>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 72 MTSVVQIGRAQEVSVLPTKHIVWVLEKLVFQTKRPCWN*SWDLSQIIQP 218
M V+QI +E++ LPT ++V + + CWN +W+ + P
Sbjct: 1125 MIKVIQISNCEELASLPTNNLVHFVHLEDLEICH-CWNLNWEPGLALPP 1172
>05_04_0263 + 19534563-19535522
Length = 319
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 548 PSYFGNGIEDRMYP-LKDKLEFYLEETGYSHLQSTKPDTIGIVLTD 414
P G G+ED++ P ++ LEF + + + + + PD +GI L D
Sbjct: 88 PYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRD 133
>03_06_0692 + 35585445-35586008,35586222-35586560
Length = 300
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 526 MPLPKYEGHNNPPRSQVNKDNLDVLAGKFVWKPSTSEGKIV 648
M L K+EG PP S N NL + A + + ++G +V
Sbjct: 201 MALTKFEGFTAPPYSPNNSKNLPLTAALLKFIDAVNQGSLV 241
>09_02_0107 +
4354470-4354589,4355058-4355156,4355292-4355596,
4356101-4356278,4356368-4356481,4356543-4356674,
4356784-4356888
Length = 350
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 362 NHTNKFEDEGGIDKY-YDFDKLLDNIMLYWASGSITTSLRIYKETF 228
NH N G +Y Y F L+DN+ + W+S S + S R +T+
Sbjct: 159 NHYNNILSIGETQQYKYKFAVLMDNVKVTWSSLSKSLSPRGVVDTY 204
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 362 NHTNKFEDEGGIDKY-YDFDKLLDNIMLYWASGSITTSLRIYKETF 228
NH N G +Y Y F L+DN+ + W+S S + S R +T+
Sbjct: 798 NHYNNILSIGETQQYKYKFAVLMDNVKVTWSSLSKSLSPRGVVDTY 843
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 362 NHTNKFEDEGGIDKY-YDFDKLLDNIMLYWASGSITTSLRIYKETF 228
NH N G +Y Y F L+DN+ + W+S S + S R +T+
Sbjct: 551 NHYNNILSIGETQQYKYKFAVLMDNVKVTWSSLSKSLSPRGVVDTY 596
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 696 LHSRRRFRAHDRIPYRHDLP 637
LHSRR R + R P RHD P
Sbjct: 192 LHSRRDGRGYSRSPRRHDSP 211
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 626 VLLRGRSWRYGIRSCARNRRLECSIGCSRVYASSFALLWPF 748
+L + R WR G+ R+RRL S C+ + + W F
Sbjct: 497 ILWKHRDWRTGLAEVRRSRRLTVSFICT-IANYEYGFYWHF 536
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 520 SSMPLPKYEGHNNPPRSQVNKDNLDVLA----GKFVWKPSTSEGKIVAIWDPIM-CPKS 681
S P P EGH++ P V + VL GK + + ++ G +AI DP+ CP S
Sbjct: 51 SMHPSPPPEGHSDQPVHGVTNTVVGVLGGGQLGKMLCQAASQMGVRMAILDPLEDCPAS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,070,463
Number of Sequences: 37544
Number of extensions: 568742
Number of successful extensions: 1352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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