Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c19r
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10448| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                30   2.1  
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                  30   2.1  
SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)                    29   6.3  
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)                       28   8.4  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)                     28   8.4  
SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_10448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 185 VPTWALRLKYELFQHPDYMLRWKYTNLLGSTNLDYGGHFAAFERPKDFSDDVFKAVK 15
           VP        E+   P   L   + +++  T +  GGHFAA + P+  + DV + V+
Sbjct: 6   VPVGLADFPDEIIHLPQPWLSATFIDIIQHTEMPRGGHFAALQEPELLAQDVMEFVR 62


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 503 KDKLEFYLEETGYSHLQSTKPDTIGIVLTDSPVALGSYILDRFMIFTNHTNK 348
           KD   F +EE+ +  L STK  +  + L D+P A GS+++D  ++     +K
Sbjct: 380 KDVSAFDVEESTFVSLGSTKNKSKSVTLGDTPDA-GSFMIDESIVLEGTRHK 430


>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 184

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 NLRRSPCKSSVTWLYSRRPNITLCCPVTCQNRNTCQCRLHLQTYW 355
           NL  + C+SSV WLY+ +    +C     QN +   C   ++  W
Sbjct: 80  NLSVAICQSSVRWLYAFKRVCRICQSTGRQNLSVTICECSVRWLW 124


>SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)
          Length = 641

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 705 HPIL-HSRRRFRAHDRIPYRHDLPLRSTWLPHEFPS 601
           HP+  H +++   HD++ Y +D+   S  +PH +P+
Sbjct: 294 HPVSSHEQQQAWHHDQMAYPYDMTTTSYAVPHTYPA 329


>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 438

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/16 (75%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +2

Query: 293 CPVTCQNRNTCQ-CRL 337
           CPV  QNRN CQ CRL
Sbjct: 121 CPVDIQNRNQCQYCRL 136


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 108  VSVLPTKHIVWVLEKLVFQTKRPCWN*SWDLSQIIQPRTCEGL-LVNPQ*R 257
            V VLPT     V+E+L+F   +P  N S       Q +TC    L+N Q R
Sbjct: 2336 VFVLPTLASSMVMERLLFACAQPATNGSTSQGMNHQGQTCSNYKLINKQPR 2386


>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
          Length = 422

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 709 PSLRIKFRIIMAISYVSNPGRVGASENTKPGK 804
           P +R++  ++ AIS  S   R G +  T+PGK
Sbjct: 189 PRIRVESLLVSAISRASAQQRAGRAGRTRPGK 220


>SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 818 VIAPSLPGF-VFSEAPTRPGLDTYEMAIIMRNLMRRLGYTQYYIQGGDFGHMIGSHIATI 642
           ++A   PG  + S  P        +  + +R ++ +LG+ ++ + G   G  + +  A  
Sbjct: 57  LVAFDFPGHGMSSRRPAGTAYTFLDWVLDVRKVVVQLGWVKFSMIGHSMGASVAALYAGT 116

Query: 641 FPSEVL 624
           FPSEV+
Sbjct: 117 FPSEVI 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,910,961
Number of Sequences: 59808
Number of extensions: 669085
Number of successful extensions: 1843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)