Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c19r
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   193   2e-49
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   0.83 
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    29   5.5  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    28   9.7  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    28   9.7  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical protein
            W01A11.1 protein.
          Length = 452

 Score =  193 bits (470), Expect = 2e-49
 Identities = 107/278 (38%), Positives = 151/278 (54%), Gaps = 3/278 (1%)
 Frame = -1

Query: 839  DYDFVFEVIAPSLPGFVFSEAPTRPGLDTYEMAIIMRNLMRRLGYTQYYIQGGDFGHMIG 660
            D DF FEVIAPS+PG+ +S+ P + G      A + R LM RLGY ++Y+QGGD+G +I 
Sbjct: 174  DSDFAFEVIAPSIPGYGWSDQPKKTGFSQLACARVFRKLMLRLGYNKFYLQGGDWGAIIT 233

Query: 659  SHIATIFPSEVLGFHTNF-PANXXXXXXXXXXXXXXXW-PSYFGNGIEDRMYPLKDKLEF 486
            S +  ++P  V+  H N  PA                  PS   +    + +    K   
Sbjct: 234  SLLTKVYPQNVMALHLNMMPAMPGANALGTFYDILGWLIPSTLSSKEIQKTHNPFSKFGL 293

Query: 485  YLEETGYSHLQSTKPDTIGIVLTDSPVALGSYILDRFMIFTNHTNKFEDEGGIDKYYDFD 306
             + ETGY HLQ+TKPDT G  L DSP+ L +YI+++F  +TN  N+   +GG++K +  D
Sbjct: 294  LIVETGYMHLQATKPDTAGTSLNDSPIGLAAYIIEKFSTWTNTENRALPDGGLNKRFTND 353

Query: 305  KLLDNIMLYWASGSITTSLRIYKETFAGSRLNNLAQVPTSVPTWALRLKYELFQH-PDYM 129
            +LL  +M+YW +G+I +S R Y+E F   R   L +   S PT       EL+   P  +
Sbjct: 354  ELLTIVMIYWTNGNIVSSQRFYREMFLDRRCEALGKRYVSTPTAHASGLNELYDRTPIEV 413

Query: 128  LRWKYTNLLGSTNLDYGGHFAAFERPKDFSDDVFKAVK 15
             R  Y N+   T +D  GHFAAFE PK  +  VFK VK
Sbjct: 414  SRHSY-NITHYTEIDM-GHFAAFEAPKPLAQSVFKFVK 449


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 10/280 (3%)
 Frame = -1

Query: 824 FEVIAPSLPGFVFSEAPTRPGLDTYEMAIIMRNLMRRLGYTQYYIQGGD-FGHMIGSHIA 648
           FEVI PSLPGF+FS+ PT+ G +    A I+  LM RL    Y++ G + +G  + + ++
Sbjct: 179 FEVIVPSLPGFIFSDKPTKQGFNAIATARIIAKLMYRLNLNNYFVHGTEGYGSDVATLLS 238

Query: 647 TIFPSEVLGFHTNFPANXXXXXXXXXXXXXXXWPSYFGNGIEDR-----MYPLKDKLEFY 483
           +++P+ + G H    +N                    G   EDR         KD  +  
Sbjct: 239 SLYPTRIAGLHL---SNPFVNPTFSTFTLAKYALKAMGQKDEDRENQENRETGKDNRDQM 295

Query: 482 LEETGY----SHLQSTKPDTIGIVLTDSPVALGSYILDRFMIFTNHTNKFEDEGGIDKYY 315
            +   Y         T     G    +SP     YI  R+       + F  E  +++ +
Sbjct: 296 TDLADYFKQDKFAYPTNSQAFGAAFLNSPSGTAKYIESRW----KQLSTFFAETNLNELF 351

Query: 314 DFDKLLDNIMLYWASGSITTSLRIYKETFAGSRLNNLAQVPTSVPTWALRLKYELFQHPD 135
             D++   I LYW + ++ ++L I   +F    +   +QV   +PT     K   ++   
Sbjct: 352 TMDEIATEIYLYWLTDTLPSALTILDSSFNFESVWLSSQV--RIPTAVSYSKQTPWRCSK 409

Query: 134 YMLRWKYTNLLGSTNLDYGGHFAAFERPKDFSDDVFKAVK 15
            +L  +Y NL   + L  GG F   +     ++D+F  V+
Sbjct: 410 DILEDRYLNLTRISELPKGGMFHHLQDGHKIAEDIFSFVE 449


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect(2) = 0.83
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 686 GGDFGHMIGSHIATIFPSEVLGFHTNF 606
           GG FG  +G  I T+    + GFH+ F
Sbjct: 85  GGQFGFFLGLSIITLIQMVLYGFHSAF 111



 Score = 22.2 bits (45), Expect(2) = 0.83
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 836 YDFVFEVIAPSLPGFV 789
           Y++V E+   S+PGF+
Sbjct: 66  YEYVKEIYTTSIPGFM 81


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 812 APSLPGFVFSEAPTRPGLDTYEMAIIMRNLMRRLGYTQYYIQGGD 678
           A ++ G +    P  P  D Y   II   +  R G  + Y+Q GD
Sbjct: 838 AMTINGSLAISNPPTPKADAYSFGIIFHEIFTREGPYKIYVQRGD 882


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 274
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 275 PNITLCCPVT 304
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 274
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 468 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 527

Query: 275 PNITLCCPVT 304
                  P+T
Sbjct: 528 SAQAFVDPIT 537


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 274
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 275 PNITLCCPVT 304
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 274
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 207 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 266

Query: 275 PNITLCCPVT 304
                  P+T
Sbjct: 267 SAQAFVDPIT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,224,966
Number of Sequences: 27780
Number of extensions: 484925
Number of successful extensions: 1415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)