Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c19r
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    64   2e-12
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 64.1 bits (149), Expect = 2e-12
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = -1

Query: 689 QGGDFGHMIGSHIATIFPSEVLGFHTNFPANXXXXXXXXXXXXXXXWPSYFG-NGIEDRM 513
           QGGD+G +I S +A +FP +++G H N                   +PS  G N    + 
Sbjct: 1   QGGDWGSVIASDMAVLFPEKIIGLHNNM-CTSLNLSNLFWLFVGTYFPSLIGANEHYSKF 59

Query: 512 YPLKDKLEFYLEETGYSHLQSTKPDT 435
           +P+ + L F +EE+GY H+Q+TKPDT
Sbjct: 60  FPVSEILSFLIEESGYFHIQATKPDT 85


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 705 HPILHSRRRFRAHDRIPYRHDL 640
           HPI H RR+ R+ D   +R  +
Sbjct: 82  HPIRHGRRQSRSMDLNAHREQM 103


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 260 LYSRRPNITLCCPVTCQ----NRNTCQCRL 337
           LYS R ++TL CP+  +    +R  C  R+
Sbjct: 149 LYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 260 LYSRRPNITLCCPVTCQ----NRNTCQCRL 337
           LYS R ++TL CP+  +    +R  C  R+
Sbjct: 149 LYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,110
Number of Sequences: 438
Number of extensions: 6281
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)