Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c19f
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    28   1.5  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   2.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.1  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.0  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 419 VHSDAFAQFFSHWIFKYKFRERVKFLNKYDHFLTNIQG 532
           V    + +FF H     + +E VK LN   +F+TN  G
Sbjct: 457 VFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNG 494


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 311 VIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSD 430
           +I S  ME  IRALFE Y L + +  S +  +    VH D
Sbjct: 98  IILSSGMEPFIRALFEQY-LGKEEASSIEIVSNDINVHPD 136


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 125 LVFGVFSKIISYLFVVKALFTIYGIYLVYVSLT 223
           L+F V+  IIS   V   + T YG YLV  SLT
Sbjct: 13  LLFFVYLLIISTRLVAADMNTQYGCYLVDSSLT 45


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +2

Query: 434 FAQFFSHWIF-KYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKNVKVVPLLLLHG 610
           F +F S+++  KY F     F       +  + G D H++      +     VP + +  
Sbjct: 90  FGKFASYYLQGKYFFDLHPPFAKLLLALVAKLAGYDGHYLFDNIGDNYKDNGVPYVTIRA 149

Query: 611 WPGSVREFYEAIPLLTTPRPDYDFVFEVIAPS 706
           WP  +      +  L      YD +  +++ S
Sbjct: 150 WPALLSSLVPPVVFLIMKESGYDLLACIVSSS 181


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 194 GIYLVYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPYRVIFSDAMESEIRALFEDY 364
           G+ + +V   NV  +P+   +L     NN+      PYR+   D  E E+ +    Y
Sbjct: 235 GLDIKFVDYGNVYGVPEHTSSLSLKETNNSDAGYTEPYRLYNVDLFEYEVDSPMSQY 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,700
Number of Sequences: 5004
Number of extensions: 54665
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)