Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c19f
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_55785| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 2.8
SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 2.8
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1) 29 2.8
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5) 29 2.8
SB_40198| Best HMM Match : Peptidase_C54 (HMM E-Value=3.7) 29 2.8
SB_30459| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 2.8
SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35) 29 2.8
SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3) 29 2.8
SB_33044| Best HMM Match : TAFH (HMM E-Value=2.6) 29 3.7
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8) 29 3.7
SB_42541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 272 DNNTHDTRIRPYRVIFSDAMESEIRALFEDYRLMERKIK 388
D N + Y V S+A ++ ++FE+YR M R+++
Sbjct: 802 DMNAEEPEDNTYDVETSEAYNYQVSSIFEEYRFMPRQVE 840
>SB_55785| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 447
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 111 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 145
>SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_47832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 640
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 273 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 307
>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
Length = 417
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 230 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 264
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 361 LPSHGEEDKELQKHGLDLWRSFRCVCTVLL 450
LP+ E+ K KHGLDL R + C C +L+
Sbjct: 158 LPAAREDFKTCAKHGLDL-RFYCCTCELLM 186
>SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5)
Length = 342
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 90 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 124
>SB_40198| Best HMM Match : Peptidase_C54 (HMM E-Value=3.7)
Length = 221
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 100 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 134
>SB_30459| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 347
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)
Length = 587
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)
Length = 535
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 362 TWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIK 396
>SB_33044| Best HMM Match : TAFH (HMM E-Value=2.6)
Length = 201
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDGIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 206 VYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPY 307
VY S +P +PK N + DN TH T+ P+
Sbjct: 172 VYSSAMGLPRIPKKKKNTFYHNDNKTHSTQTGPW 205
>SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8)
Length = 283
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 706 TWSYYFEHKIVIWSRSS*KWNCFVKFSNRTWPAVQ 602
TW Y + V+W+ K N FV + N P ++
Sbjct: 31 TWLRYIDGIFVVWTEGLDKLNAFVDYLNNLHPTIK 65
>SB_42541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 634 KFSNRTWPAVQK*KGYHLNIFISFRLNTNKMYIQTLNISQEMIV 503
K N ++PA + +L IF+S + NT K+Y +IS+ MIV
Sbjct: 35 KHENNSFPAAKSTN--NLQIFVSLKKNTLKVY-SDKSISKNMIV 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,797
Number of Sequences: 59808
Number of extensions: 376742
Number of successful extensions: 941
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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