Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c19f
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 108 4e-24
Z74029-6|CAM84812.1| 457|Caenorhabditis elegans Hypothetical pr... 88 5e-18
U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat debr... 31 1.1
AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat debran... 31 1.1
Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical pr... 28 7.5
L12018-10|AAA65466.2| 683|Caenorhabditis elegans Dumpy : shorte... 28 7.5
AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical ... 28 7.5
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 108 bits (259), Expect = 4e-24
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Frame = +2
Query: 287 DTRIRPYRVIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFK 466
+T I+P++V ++ +++ ++ R+ ++ + + YG +S + +W+ K
Sbjct: 46 NTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDD--FYYGFNSKQLLKLRDYWLNK 103
Query: 467 YKFRERVKFLNKYDHFLTNIQGLDIHFVRVK-PKADKNVKVVPLLLLHGWPGSVREFYEA 643
Y +R++ +N++ F T I+GL +HF+ VK PK+ KNVK P+L+ HGWPG+V EFY+
Sbjct: 104 YDWRKQEATINQFPQFKTEIEGLQVHFLHVKPPKSYKNVK--PILVAHGWPGNVFEFYKF 161
Query: 644 IPLLTTPRP---DYDFVFEVIAPS 706
IPLLT P+ D DF FEVIAPS
Sbjct: 162 IPLLTDPKKHGIDSDFAFEVIAPS 185
>Z74029-6|CAM84812.1| 457|Caenorhabditis elegans Hypothetical
protein C45B11.6 protein.
Length = 457
Score = 88.2 bits (209), Expect = 5e-18
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 10/194 (5%)
Frame = +2
Query: 155 SYLFVVKALFTIYGIYL-VYVSLTNVPDLPKVDVNLRWGVDN-NTHDTRIRPYRVIFSDA 328
S+ F + +I+ I L +Y+ + P L ++D + W +D+ D I + + D
Sbjct: 3 SWFFFSVVVISIFSILLSIYIHKPDFPPL-EIDPDDYWKLDDPEKDDDTIYSFTI---DI 58
Query: 329 MESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFKYKFRERVKFLNKYD 508
ESE+ E K++S + Y + D + + + +++ FLN +
Sbjct: 59 KESEVSNFKE-------KLESERFLPTLYDTNYDNYLNELKQVLLGFNWKQHQHFLNTFK 111
Query: 509 HFLTNIQGLDIHFVRVK-PKADKNVKVVPLLLLHGWPGSVREFYEAIPLLTTP-RPDYDF 682
+ T I+GL IHF+RV P DK +VVPLL+ HG+PGS +F++ IP+LT P R +DF
Sbjct: 112 QYKTEIEGLKIHFLRVSTPPKDKKSRVVPLLIFHGFPGSFWDFFKIIPILTNPSRHGFDF 171
Query: 683 ------VFEVIAPS 706
FEVI PS
Sbjct: 172 GVEEAIQFEVIVPS 185
>U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat
debranching enzyme protein.
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 446 FSHWIFKYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKNVKV---VPLLLLHGWP 616
FS F++ ER F + +++ +D+ +R + K+D K+ + ++L H WP
Sbjct: 167 FSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLR-QLKSDNENKISNPIDIMLSHDWP 225
Query: 617 GSVREF 634
G + +F
Sbjct: 226 GGIPDF 231
>AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat
debranching enzyme relatedprotein 1 protein.
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 446 FSHWIFKYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKNVKV---VPLLLLHGWP 616
FS F++ ER F + +++ +D+ +R + K+D K+ + ++L H WP
Sbjct: 167 FSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLR-QLKSDNENKISNPIDIMLSHDWP 225
Query: 617 GSVREF 634
G + +F
Sbjct: 226 GGIPDF 231
>Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical
protein F58B4.5 protein.
Length = 423
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +2
Query: 338 EIRALFEDYRLMERKIKSFKNTAWTYG-----VHSDAFAQFF 448
E+ +++DY + IK+FKNT +G HSD ++ F
Sbjct: 241 EMLKIYKDYYFQPQMIKNFKNTCQFFGYKPVLTHSDLWSSNF 282
>L12018-10|AAA65466.2| 683|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 19 protein.
Length = 683
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 334 FHRVTKYHP-VGPYSGVVRVIIDAPS*IDVDFGQIRNVRQRHVHQINTVNR 185
F R Y +G Y + II+APS ++ + H H+INT+NR
Sbjct: 62 FEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDTVTEHGHEINTLNR 112
>AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical
protein Y43C5A.2 protein.
Length = 452
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 203 LVYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPYRV 313
+ Y T++ P + N +G+DN H + +PYR+
Sbjct: 248 ITYDKYTDIIGTPGKETNFWFGLDNMNHLSGAKPYRL 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,590
Number of Sequences: 27780
Number of extensions: 294219
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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