Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c19f
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19970.1 68417.m02924 expressed protein similar to GI:2827651...    30   1.7  
At3g11840.1 68416.m01451 U-box domain-containing protein low sim...    29   3.0  
At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1) ident...    27   9.2  
At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1) ident...    27   9.2  

>At4g19970.1 68417.m02924 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853,
           GI:10764852 from [Arabidopsis thaliana]; predicted
           protein PATCHX:E326963
          Length = 715

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +2

Query: 302 PYRVIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFKYKFRE 481
           P+   F DA   + +   +DY       K+  N+ +TY   ++  ++F+ +WI     R 
Sbjct: 228 PFPRFFPDA---DFQITCDDYNGRPSDKKNHVNSGFTYVKANNKTSKFYKYWI-----RS 279

Query: 482 RVKFLNKYDHFLTNIQGLDIH 544
             KF  K+D  + N    D+H
Sbjct: 280 SRKFPGKHDQDVFNFIKNDLH 300


>At3g11840.1 68416.m01451 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 470

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 EEDKELQKHGLDLWRSFRCVCTVLLTLDIQIQVQG 480
           E+ KE+ K   D W+ F C+   LLT  + I  +G
Sbjct: 433 EKAKEILKDHFDEWKKFPCIDITLLTKLLSISPKG 467


>At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1)
           identical to GI:9857296 AtABA1; controls Pfam profiles
           PF01360: Monooxygenase and PF00498: FHA domain;
           identical to cDNA AtABA1,  GI:9857295
          Length = 610

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 257 LRWGVDNNTHDTRIRPYRVIFSDAMESEIRALFEDYRLMERKIK 388
           L W +  N+   + RP     +D  +  +R  FED   +ER IK
Sbjct: 487 LDWVLGGNSEKLQGRPPSCRLTDKADDRLREWFEDDDALERTIK 530


>At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1)
           identical to GI:9857296 AtABA1; controls Pfam profiles
           PF01360: Monooxygenase and PF00498: FHA domain;
           identical to cDNA AtABA1,  GI:9857295
          Length = 667

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 257 LRWGVDNNTHDTRIRPYRVIFSDAMESEIRALFEDYRLMERKIK 388
           L W +  N+   + RP     +D  +  +R  FED   +ER IK
Sbjct: 487 LDWVLGGNSEKLQGRPPSCRLTDKADDRLREWFEDDDALERTIK 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,411
Number of Sequences: 28952
Number of extensions: 265566
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)