Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c14r
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    65   7e-11
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    60   2e-09
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    48   1e-05
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    38   0.007
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    38   0.013
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    34   0.16 
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    30   2.5  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70287-4|CAA94297.1|  299|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   5.8  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   5.8  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   5.8  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   5.8  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
 Frame = -1

Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 538
           RI+GG++ + GA+  +A LV    NG+  +CGA+++ +   VTAAHC    + Q R F  
Sbjct: 37  RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93

Query: 537 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-- 364
                N  +     +     +H  YN  T  ND+A++  +       I+ + L    +  
Sbjct: 94  VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151

Query: 363 -----NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCARTFG----NNVIIA 211
                N             +S      N+Q  +  S+ +I++  C +T+      +V I 
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211

Query: 210 STLCVDGSNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGS 91
                 G+    T  GDSGGPL I  S G    IGITS+G+
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYGA 252


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 6/224 (2%)
 Frame = -1

Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 538
           R++GGS ++  + P    L+  L + R   CG SL+     +TAAHC+   R +   +++
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112

Query: 537 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN-DVAIIN-HNHVGFTNNIQRINLASGSN 364
            +G     SG     T+ V +H  YN+    + D AI+  H  V  +   + I L S   
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP- 170

Query: 363 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCAR--TFGNNVIIASTLCVDG 190
                         ++   S  +    R++ + +++   C+    +   + + S LC   
Sbjct: 171 -AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY 229

Query: 189 SNGR-STCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQR-GXP 64
           S G+  +C GDSGGPL     G  +L G+ S+G   GC R G P
Sbjct: 230 SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMP 271


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 6/219 (2%)
 Frame = -1

Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 541
           R+VGG     GA P  A L    T      CGAS+L  T  +TAAHC+    R  + +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 540 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 364
           +     N   G  ++     +  +  Y  D   +D+AI+   + G   N     +   S 
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142

Query: 363 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG 190
           +             +   + G    ++ Q +L  I N   C  +    + +  S  C   
Sbjct: 143 DFVYTPGRQCVV--SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGY 200

Query: 189 -SNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC 79
              G  +C GDSGGP       G+  L G+ S+G   GC
Sbjct: 201 LEGGIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGC 237


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 276 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 103
           ++L   T A C   +G ++   S  C      ++ CSGDSGG LT     S +  +I I 
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294

Query: 102 SFGS 91
           S+GS
Sbjct: 295 SYGS 298



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -1

Query: 702 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 571
           +A N G   HLA   + +    R      ICG +L+T    +TAAHC++
Sbjct: 32  AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -1

Query: 720 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 577
           T I+ G +AN+     LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 15  TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 228 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGC 79
           ++ I A+++ V   +   TC GDSGG L     + G   LI ITSFG+ +GC
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGC 266


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -1

Query: 318 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 148
           + AA+G NN      S +V +    A+ FG +     I +     GS G     G SGG 
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478

Query: 147 LTIGSGGSRQLIGITSFGSA 88
              G+GG+R      S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 493 GDPGASGEDVSCAKSEGELTSLGSPGPP 576
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>Z70287-4|CAA94297.1|  299|Caenorhabditis elegans Hypothetical
           protein R09E10.6 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 815 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVL 699
           ++ PS +  T  ++ P   V+D+P  P+TS+  GL  VL
Sbjct: 157 RQQPSKNVETMTAIEP-VEVMDSPTSPVTSSNSGLITVL 194


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 645 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 776
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 645 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 776
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -3

Query: 412 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 239
           +L +Q PAHQ  Q K+Q C      C      +C   ++ P      E    + R++ R 
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589

Query: 238 HVWKQCDHC--LHP 203
              K CD C   HP
Sbjct: 590 LCPKTCDICNETHP 603


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 836 RWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 714
           R RP + +++ + +TTT  SVS  P++ D    P   +V G
Sbjct: 259 RGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVTG 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,622
Number of Sequences: 27780
Number of extensions: 389125
Number of successful extensions: 1812
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)