Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c11f
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0603 - 4350124-4350590,4350995-4353608 33 0.32
03_05_1129 - 30595580-30595771,30596119-30597162 31 0.97
11_06_0610 - 25449085-25453284 31 1.3
05_01_0545 - 4756266-4757510 29 2.9
01_01_0490 + 3620523-3623403,3623524-3623996 29 2.9
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 3.9
04_04_0207 + 23602065-23604315,23604611-23605116 29 3.9
12_01_1033 + 10629897-10632311,10633874-10633879 29 5.2
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 6.8
07_03_1001 - 23224372-23224385,23225451-23227374 28 6.8
12_01_0337 - 2591689-2593839 28 9.0
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 28 9.0
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 28 9.0
06_03_0615 - 22761375-22761760,22762218-22765026 28 9.0
06_03_0588 + 22567820-22570802,22570917-22571269 28 9.0
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 124 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQG 225
PE R+R+ E LSN + G P ++G+ P+ G
Sbjct: 349 PEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLG 382
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 31.1 bits (67), Expect = 0.97
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -1
Query: 467 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 345
A SLR V G G I +EL S PP S E R VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = -1
Query: 410 VSTLVPPLKS-------VTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCP 252
V +++PP+KS ++EP T + P + +++ A +S P+TP + P
Sbjct: 1037 VESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPPAKSSPPHEPISPPETPEKSYP 1096
Query: 251 LTTMVISRPP**GNCPRVAGEPPTILVLLSPASSAL 144
+T S PP + P+ A PPT L PA+ +L
Sbjct: 1097 PSTPEESSPP---SVPK-ASSPPTEKSLPPPATVSL 1128
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 121 VPEA-ERIRKAEEAGLSNTRIVGGSPATLGQFP 216
VP+A R+R+ E LSN R+VG P+ + P
Sbjct: 138 VPDALRRLRRLHELDLSNNRLVGAFPSAVLDLP 170
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 124 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLI-TIVVNG--QPRTGVC 276
PE K GL+ T I G PATLGQ L I T +++G P G C
Sbjct: 220 PEIGNCSKLTMLGLAETSISGPLPATLGQLKNLNTLAIYTALLSGPIPPELGRC 273
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 70 TLPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLIT 240
TL L N ++G + P R+ + + LSN + G P+T+GQ P+ L ++
Sbjct: 84 TLDLSYNLLHGEIP----PTIGRLSRMKYLDLSNNSLQGEMPSTIGQLPWLSTLYMS 136
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 94 VYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGV 273
V G +PE R R+ LS + G PA+LG P +L I V+ TG
Sbjct: 406 VSGNALSGAIPELTRCRRLVSLSLSGNALTGPIPASLGGLP----VLTYIDVSSNGLTGA 461
Query: 274 CGASL 288
A L
Sbjct: 462 IPAEL 466
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 23 HSLRPACYWWLTAVLLHCLCMKIRYTVTLLSMVYQ 127
HSL+P C +LT++ LH ++ +++L +Y+
Sbjct: 524 HSLKPPCRSYLTSLKLHGDLFRLHGLISMLKNLYE 558
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 378 HGTKNDRYARALVGAIEPAVSSCQ*SVSGN--KRSSADARAWLSI 250
H T DR ++ + PA+ + Q VS +R+ AD+R W S+
Sbjct: 647 HDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADSRFWWSL 691
>07_03_1001 - 23224372-23224385,23225451-23227374
Length = 645
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 163 LSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCW 327
LSN +V + GQF YQG + V+G G ++T AH +
Sbjct: 20 LSNDVVVASAAGGDGQFTYQGFAAANLTVDGLATVTASGLLVLTNFTYQAKAHAF 74
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 338 PTKARA*RSFLVP*HSSAVAPELRPVRL*CIRIGLLLPFVMMWPSFTYPVPLLCLIQSIR 517
P A A + LVP + PV + I +GLLLP V + SF V L L+ +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLL 158
Query: 518 SL 523
L
Sbjct: 159 RL 160
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 460 DVAVIYLPSPVTLSDTINTIALP 528
+++ + LP P+T S +TIALP
Sbjct: 227 EISTVMLPCPITTSSLCSTIALP 249
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 520 ALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLD 648
A+P G +Q+ + A+ASG S+SG+ TT S V +D
Sbjct: 475 AIPLGLAVQQGDIIQGALASGVIQESNSGAGTTQPCHSEVFID 517
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 73 LPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLIT 240
L +H N G + P+ + E+ LS ++ G PA+ G F Y L+++
Sbjct: 509 LDVHNNSFTGAIP----PQFGELMNLEQLDLSMNKLTGEIPASFGNFSYLNKLILS 560
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 67 FTLPLHENPVYGYLTKYGVP-EAERIRKAEEAGLSNTRIVGGSPATLGQ 210
F+L H + + YL+ G+P E + + +SN R+ G P+ LGQ
Sbjct: 585 FSLSEHLDLSHNYLSG-GIPQEVGNLINLNKLSISNNRLSGNIPSALGQ 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,828,997
Number of Sequences: 37544
Number of extensions: 484233
Number of successful extensions: 1503
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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