Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c08r
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 32 0.11
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 30 0.46
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 27 2.5
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 27 3.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 4.3
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 27 4.3
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 26 5.7
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 5.7
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 26 7.5
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.9
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -3
Query: 452 SDLMSHLYFEIPPILESEITLS------TTADVAVFNYYFNYSGGRNFLKYLTGFKNET 294
++L SHL+ ++ P ++ + L ++ V YF +S N LKY +G+ + T
Sbjct: 87 NELTSHLFPDVVPAIQRSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTT 145
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = -3
Query: 635 KEGLLIISKDNEETVSERDSKYLFASDLEFQTEEEAEKEDNKA 507
++G+L +S+D E+ +E + ++ E + EEE E+E+N+A
Sbjct: 284 EQGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEA 326
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -3
Query: 797 SLRNLWXKYLDTQLLH--LPCIEKNIP 723
SLR L YLD LLH +P EK IP
Sbjct: 94 SLRKLGTDYLDLYLLHSPIPFYEKKIP 120
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 608 DNEETVSERDSKYLFASDLEFQTEEEAEKEDNK 510
+ E+ V + KY F D + E++ EKED+K
Sbjct: 15 EKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDK 47
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 467 NIMNISDLMSHLYFEIPPILESEITLSTTADVA 369
N MN LMS L F +PP+ +E + ++ ++
Sbjct: 502 NCMNAQSLMSSLGFSVPPMSYAEFLIISSFHIS 534
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 428 FEIPPILESEITLSTTADVAVFNY--YFNYSGGRNF 327
F IP ++ I T +V Y YFNY+ G NF
Sbjct: 7 FSIPSLVSYVIFYDTVIPHSVIQYPVYFNYTTGLNF 42
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -3
Query: 200 MTKLWSNFAKYGDPTPEDASDL-PIKWVPS 114
+TK S+ + Y +P+P++AS+L +K+V S
Sbjct: 43 LTKKLSSLSIYSEPSPDEASNLQELKFVSS 72
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 467 NIMNISDLMSHLYFEIPPILESEITLSTTAD---VAVFNYYF-NYSGGRNFLKYLT 312
N + S+ + HL+ +IP L E+T T + ++F + F N S N LK LT
Sbjct: 182 NRLGGSEYVLHLFAQIPKALCKELTDVRTLNHPLRSIFTFCFKNISNPPNLLKLLT 237
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 794 LRNLWXKYLDTQLLHLPCIEKNIPDVEPALTDLPYNLLTKKPKKI 660
L+ LW KY DT L +L + I V ++ PY+ L +PK +
Sbjct: 415 LQKLW-KYDDTTLEYLKIVNGGIKFVAFSILLGPYSKLFAEPKSL 458
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1
Query: 592 TVSSLSFDIISNPSLLVEPYI 654
T+ +++ ++ NP+L VEPY+
Sbjct: 256 TLMHMAWALLDNPNLFVEPYV 276
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 614 SKDNEETVSERDSKYLFASDLE--FQTEEEAEKEDNKAR 504
S DNE +R K LFASD E ++ + E +KAR
Sbjct: 268 SSDNEYATFDRVKKDLFASDEEDDVSADQLSSYERDKAR 306
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 640 VEPYITGIFFGFFVSKLYGKSVKAGSTSGIFFSIHGKCNSW 762
++ Y T F FF+S+L + + + T FFS ++W
Sbjct: 251 IDAYFTESFGSFFISRLASQFLVSFQTLPSFFSFPLVTDNW 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,378
Number of Sequences: 5004
Number of extensions: 62508
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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