Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c08r
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    48   8e-08
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           48   8e-08
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    35   8e-04
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 48.4 bits (110), Expect = 8e-08
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 10/178 (5%)
 Frame = -3

Query: 662 IPVMYGSTSKEGLLIISK--DNEETVSERDSKY-LFAS---DLEFQTEEEAEKEDNKA-R 504
           +P + G TS+EGL  +++     E +   D  + L A    D  +   +E   E  +  R
Sbjct: 332 VPWVTGVTSEEGLYPVAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIR 391

Query: 503 QLYFNGQRMSMNNIMNISDLMSHLYFEIPPILESEITLSTTADV---AVFNYYFNYSGGR 333
             YF   ++    + ++ D+ S  +F    I + E      A V    V+ YY+ Y G  
Sbjct: 392 NYYFESNKIDETTLKHLIDVASDRFF----ITDGEKAARMQAKVNRQPVWFYYYTYKGAH 447

Query: 332 NFLKYLTGFKNETGACHGDELLYLFRGDLWPFPISRKDKKMIDWMTKLWSNFAKYGDP 159
           +  + ++G  N+ G CH D+   +          +  D KM   +   W +F   G P
Sbjct: 448 SISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNGVP 505


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 48.4 bits (110), Expect = 8e-08
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 10/178 (5%)
 Frame = -3

Query: 662 IPVMYGSTSKEGLLIISK--DNEETVSERDSKY-LFAS---DLEFQTEEEAEKEDNKA-R 504
           +P + G TS+EGL  +++     E +   D  + L A    D  +   +E   E  +  R
Sbjct: 332 VPWVTGVTSEEGLYPVAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIR 391

Query: 503 QLYFNGQRMSMNNIMNISDLMSHLYFEIPPILESEITLSTTADV---AVFNYYFNYSGGR 333
             YF   ++    + ++ D+ S  +F    I + E      A V    V+ YY+ Y G  
Sbjct: 392 NYYFESNKIDETTLKHLIDVASDRFF----ITDGEKAARMQAKVNRQPVWFYYYTYKGAH 447

Query: 332 NFLKYLTGFKNETGACHGDELLYLFRGDLWPFPISRKDKKMIDWMTKLWSNFAKYGDP 159
           +  + ++G  N+ G CH D+   +          +  D KM   +   W +F   G P
Sbjct: 448 SISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNGVP 505


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
 Frame = -3

Query: 455 ISDLMSHLYFEIPPILESEITLSTTADVAVFNYYFNYSGGRNFLKYLTGFKNETGACHGD 276
           ++D++   +F  P I  ++  L     + V+ Y+F      N       +    G  HGD
Sbjct: 447 VADVVGDYFFICPSIHFAQ--LFADRGMKVYYYFFTQRTSTNL------WGEWMGVLHGD 498

Query: 275 ELLYLFRGDL-WPFPISRKDKKMIDWMTKLWSNFAKYGDPTPEDASDLPIKWVPSKRNYL 99
           E+ Y+F   L      S K++ +   M   +S FA  G PT ED+     +W    R+  
Sbjct: 499 EVEYVFGHPLNKSLKYSDKERDLSLRMILYFSEFAYLGKPTKEDS-----EWPSYSRDEP 553

Query: 98  K-FLYIEDDLSMGTIPSPEAYRLWKYMYEKYR 6
           K F++  +   +G  P       W     K +
Sbjct: 554 KYFIFDAEKTGLGKGPRTTYCAFWNEFLPKLK 585


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
 Frame = -3

Query: 758 LLHLPCIEKNI---PDVEPALTDLPYNLLTKKPKKIPVMYGSTSKEGLLIISKDNEETVS 588
           ++H     KNI    + +P LTD   ++L   P +I   YG+       +I ++     +
Sbjct: 176 IVHADVKPKNILMSKNGQPKLTDFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRPTPAA 235

Query: 587 ERDSKYLFASDLEFQTEEEAEKEDNKARQLYFNGQRMSMNNI 462
           +  S  + A  + F+    A    +    L   G R   +NI
Sbjct: 236 DIYSLGIVAWQMLFRKLPFAGLHSHTIIYLSAKGHRPIDDNI 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,209
Number of Sequences: 438
Number of extensions: 4535
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)