Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c08f
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    34   0.019
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    27   2.9  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   3.8  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   6.7  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   6.7  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.7  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   6.7  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   8.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 545 EDCLTINVYIPALARKPL---PVMVYVHGGAFVLGS 643
           EDCL +N+++PA   KP    PV+ ++HGG   +G+
Sbjct: 80  EDCLFLNIWVPA-GEKPAEGWPVLYFIHGGWLQVGN 114


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 MCPQASIIGIIGSEDCLTINVYIPALARKP 595
           + P  ++I    + DC T+   +PALA+ P
Sbjct: 68  LAPYTNMIRTYATSDCNTLEYLLPALAQSP 97


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 347 IEQGILSGKISPDGSFFEYV 406
           IE G  +G I+PD + FEYV
Sbjct: 236 IEAGARAGMIAPDATTFEYV 255


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 523 DYWDYWFRRLFNYKRVHTRFSEK 591
           D W YW  RLF+Y  +  RF  K
Sbjct: 147 DTWHYWAHRLFHY-GIFYRFIHK 168


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 290 QDISYASLLLCFILYFIKALFHF*FISYLH 201
           +D+    + L F+L+F+  L++  FIS+++
Sbjct: 141 EDVQSVEISLRFVLHFVSFLYNSSFISHIY 170


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 422 TSNINTRFK-APLPPPSWNGVFKAVEETSMCPQASIIGIIGSEDCLTI 562
           TSN  + F  +PL P ++  V+  +   S CP+AS    + S    TI
Sbjct: 45  TSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFLESLHIRTI 92


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 453 GALNLVLMLLVAYGIPTYSKNDPSGL 376
           G L  ++  +  YG  TY KND S +
Sbjct: 10  GVLLAIVFYIFTYGFSTYRKNDTSAV 35


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 442 VQGAIAATIMEWSFQSSRRNIYVSASI 522
           +Q AIA T   + F +SRRN  +S SI
Sbjct: 137 LQSAIAQTGNNYMFTTSRRNNSISGSI 163


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 744 PKHIKPKAPSL*LNVTKITSCLTRKSGAYNSLPPLPST 631
           P H++P   S  LN + +       S  +N+ PPLPST
Sbjct: 342 PLHLEPPLSSNTLNSSTLPQ---PNSTDFNTFPPLPST 376


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 491 VEETSMCPQASIIGIIGSEDCLTINVYIPALARKPLPVMV 610
           + E S+C  + II +I  E+ L + +     A+KP+  MV
Sbjct: 758 LNEESVCLLSRIIAVISKEEDLELIINSFTCAQKPVEEMV 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,065
Number of Sequences: 5004
Number of extensions: 63612
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)