Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c05r
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    31   0.29 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    30   0.38 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.38 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    30   0.51 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.67 
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   2.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   3.6  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   6.2  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   8.2  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 200 CMCARYTKCKYIF---YLDKKAEVHSTFTPFKMGTLSP 304
           C+C  YTK ++I+   ++DK A  H +    K G+L P
Sbjct: 135 CLCKFYTKLRFIWGVKFIDKNAFYHISILKHKPGSLIP 172


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 28/95 (29%), Positives = 44/95 (46%)
 Frame = -2

Query: 633 QVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEA 454
           Q V +E   A    I E  K+ +  + + E+   E + LQK+ L E    K K   + E 
Sbjct: 178 QTVHEENTAALDSEIDELMKQINEKEEKIEEISDETDKLQKL-LRELDEEKEKVYAE-EQ 235

Query: 453 DFYHLKKQAEANKLLLTREYLELKKYEALSNNNKI 349
           +FY+   Q +  KL L R+Y +    E   N+ K+
Sbjct: 236 EFYNNLNQFQIKKLSLERQY-DCANLEFEHNSRKL 269


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = -2

Query: 597 KAIIEAEKEAHVAKIQYEQK-IMEKESLQK--IELIEDSIHKAKQQTKAEADFYHLKKQA 427
           K  IEAE++    + +  +K +MEKE  +K  I LIE+  HK  +Q + + +    K++ 
Sbjct: 120 KKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKE 179

Query: 426 E 424
           E
Sbjct: 180 E 180


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 585 EAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLL 406
           E EKE    +   E K  E +   KIE ++D   K +++TK   +     ++    K + 
Sbjct: 213 EVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETEELNKTKPIW 272

Query: 405 TREYLELKKYEALS 364
           TR   E+ K E  S
Sbjct: 273 TRNPSEVTKEEYAS 286


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -2

Query: 618  EAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHL 439
            +A+    K  +E E+   +   + E++   KE   KIE + +S    + +T AE DFY  
Sbjct: 1077 QAQEKLEKLKVEVERRRRLLSEKEERR---KELAIKIEQVTNSCSDLELRTNAEQDFYAK 1133

Query: 438  KKQAEANKLLLTREYL 391
             +  E +++    E L
Sbjct: 1134 NQDFEFDEIKRYEEQL 1149


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 633 QVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIME 529
           +VV K   +  RK + E E+ + +AK+  E+KI E
Sbjct: 264 EVVPKSPLSLDRKKVDEVEEHSSIAKLDSEEKIRE 298


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -2

Query: 531  EKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKKYEALSNNNK 352
            EK+ +    L  + +HK  ++ +   D Y   ++A  +++      LEL K +  S N+K
Sbjct: 829  EKQRVSDTRLRLERMHKFIEKDQESIDNYEQNREALESEVATAEAELELLKEDFASENSK 888


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 507  ELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKKYEALSN 361
            EL++D+ +  K   K+  D YH+      NKL + RE   L KY+ L N
Sbjct: 955  ELLKDTPNY-KSIFKSSLDIYHVVIDVNINKLPMYRE-SNLTKYKNLQN 1001


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -2

Query: 651  LTII*LQVVEKEAETARRKAIIEAEKEAHVA-KIQYEQKIMEKESLQKIELIEDSIHKAK 475
            L ++ ++ V K + T  RK +   +++ + A K   E +++  +S  + ELIEDS+  A+
Sbjct: 1036 LDLLDIEAVSKISSTDPRKKLAARKQKLNSAFKSNEEGRLLINDS-DEDELIEDSLANAQ 1094

Query: 474  QQTKAEADF 448
            Q  +    +
Sbjct: 1095 QHAEVNRTY 1103


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 149 FIIHQQLRLIYHTKIYFCMCARYTKCKYIFYLDKKAEVHST 271
           F I ++    Y  K+YFCM     K   + YL +KAE  ST
Sbjct: 261 FKIEKKKAQDYGRKLYFCMNPLRNKSSAL-YLKRKAEEEST 300


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 624 EKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIE 505
           EK+ +  R K + + ++EA   K+  EQ++ E+E  + +E
Sbjct: 664 EKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILE 703


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 383 RNMKRSPTIIRFTLEVIYPTCSYKQMLVKV 294
           R M+   + I    + +YPTC+Y+Q+LV +
Sbjct: 419 RAMQFLTSFISVCKKHLYPTCNYQQVLVSL 448


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 128 CFLKLQLFIIHQQLRLIYHTKIYFCMCAR-YTKCKYIFYLDKKAE 259
           C L  +LF+ H+ L       +++CMC R    C  + Y  K+ E
Sbjct: 269 CLLS-KLFLDHKMLYYDVDPFLFYCMCRRDEYGCHLVGYFSKEKE 312


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 3/134 (2%)
 Frame = -2

Query: 633 QVVEKEAETARRKAI--IEAEKEAHVAKIQYEQKIMEKESLQK-IELIEDSIHKAKQQTK 463
           Q++ K+ +    K I  I   K   V +   +Q+    E+L K IE     + K +++ +
Sbjct: 347 QILHKQNKIIEEKWISQIRISKNLEVKQRLLDQERHALETLAKNIENNRFILGKRRRKAR 406

Query: 462 AEADFYHLKKQAEANKLLLTREYLELKKYEALSNNNKIYFGSDIPNMFLQANVGESVPIL 283
                    K     +L +     ELK YE    + K+  G    N  L          L
Sbjct: 407 EALQKLDNLKDLSVQELFIIPSERELKYYELKRKDEKLDEGIRALNQALHHESIMPASWL 466

Query: 282 KGVKVE*TSAFLSR 241
           KG+K+     FL R
Sbjct: 467 KGIKLLARQQFLIR 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,390
Number of Sequences: 5004
Number of extensions: 69332
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)